Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3781

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
4,497,632	+		Psyr_3779	0.21	+0.5
4,497,633	-		Psyr_3779	0.22	+1.0
4,497,873	-		Psyr_3779	0.75	+0.4
4,497,873	-		Psyr_3779	0.75	-1.0
4,497,873	-		Psyr_3779	0.75	-0.6
4,498,788	+		Psyr_3781	0.20	+0.4
4,498,790	+		Psyr_3781	0.20	+0.3
4,498,790	+		Psyr_3781	0.20	-0.2
4,498,790	+		Psyr_3781	0.20	-0.8
4,498,791	-		Psyr_3781	0.20	-0.5
4,498,791	-		Psyr_3781	0.20	+0.5
4,498,791	-		Psyr_3781	0.20	+0.9
4,498,791	-		Psyr_3781	0.20	+0.6
4,498,796	+		Psyr_3781	0.21	-1.0
4,498,796	+		Psyr_3781	0.21	+3.5
4,498,796	+		Psyr_3781	0.21	-0.0
4,498,796	+		Psyr_3781	0.21	-1.2
4,498,796	+		Psyr_3781	0.21	-2.0
4,498,796	+		Psyr_3781	0.21	-2.0
4,498,796	+		Psyr_3781	0.21	-0.8
4,498,797	-		Psyr_3781	0.21	+1.0
4,498,797	-		Psyr_3781	0.21	-1.5
4,498,797	-		Psyr_3781	0.21	+1.1
4,498,797	-		Psyr_3781	0.21	-0.6
4,498,833	-		Psyr_3781	0.24	-0.0
4,498,833	-		Psyr_3781	0.24	-1.1
4,498,844	+		Psyr_3781	0.26	-1.6
4,498,845	-		Psyr_3781	0.26	-1.6
4,498,845	-		Psyr_3781	0.26	-0.5
4,498,845	-		Psyr_3781	0.26	+0.1
4,498,866	-		Psyr_3781	0.28	+0.8
4,498,964	+		Psyr_3781	0.38	+0.4
4,498,964	+		Psyr_3781	0.38	+3.5
4,498,964	+		Psyr_3781	0.38	+0.8
4,498,964	+		Psyr_3781	0.38	-0.7
4,498,964	+		Psyr_3781	0.38	-0.5
4,498,965	-		Psyr_3781	0.38	-1.4
4,498,965	-		Psyr_3781	0.38	-0.8
4,498,965	-		Psyr_3781	0.38	-1.3
4,498,965	-		Psyr_3781	0.38	+0.7
4,498,965	-		Psyr_3781	0.38	+1.7
4,498,965	-		Psyr_3781	0.38	-0.6
4,498,967	+		Psyr_3781	0.38	+1.5
4,498,967	+		Psyr_3781	0.38	-0.7
4,498,967	+		Psyr_3781	0.38	-0.9
4,498,967	+		Psyr_3781	0.38	+1.0
4,498,967	+		Psyr_3781	0.38	+0.2
4,498,967	+		Psyr_3781	0.38	-0.6
4,498,968	-		Psyr_3781	0.38	+2.9
4,498,968	-		Psyr_3781	0.38	+0.5
4,498,968	-		Psyr_3781	0.38	-2.0
4,498,968	-		Psyr_3781	0.38	+1.5
4,498,998	+		Psyr_3781	0.42	+0.1
4,498,999	-		Psyr_3781	0.42	+0.2
4,499,120	-		Psyr_3781	0.54	-0.8
4,499,138	-		Psyr_3781	0.56	-0.8
4,499,144	+		Psyr_3781	0.57	-1.0
4,499,144	+		Psyr_3781	0.57	-2.8
4,499,144	+		Psyr_3781	0.57	+3.1
4,499,145	-		Psyr_3781	0.57	+0.7
4,499,175	+		Psyr_3781	0.60	-2.8
4,499,176	-		Psyr_3781	0.60	-1.3
4,499,198	+		Psyr_3781	0.62	-0.5
4,499,198	+		Psyr_3781	0.62	-0.5
4,499,199	-		Psyr_3781	0.62	+1.5
4,499,199	-		Psyr_3781	0.62	-0.8
4,499,199	-		Psyr_3781	0.62	-0.6
4,499,456	+		Psyr_3781	0.89	-1.8
4,499,474	+				-0.8
4,499,474	+				+0.2
4,499,474	+				-0.5
4,499,474	+				+0.2
4,499,474	+				+1.5
4,499,474	+				-0.0
4,499,475	-				-0.5
4,499,475	-				+0.5
4,499,475	-				-1.7
4,499,475	-				+2.4
4,499,475	-				-0.5
4,499,475	-				+0.8
4,499,475	-				-0.5
4,499,475	-				+0.5
4,499,475	-				+0.4
4,499,596	+				-0.2
4,499,596	+				-0.5
4,499,596	+				-0.0
4,499,597	-				-0.0
4,499,597	-				+0.4
4,499,597	-				+0.4
4,499,597	-				-0.8
4,499,597	-				-0.0
4,499,620	+				+0.7
4,499,620	+				-0.8
4,499,620	+				-0.0
4,499,620	+				-0.4
4,499,620	+				+0.9
4,499,620	+				+0.5
4,499,620	+				-0.6
4,499,620	+				-0.7
4,499,620	+				+0.5
4,499,620	+				-1.3
4,499,620	+				-0.0
4,499,621	-				+4.4
4,499,621	-				-0.5
4,499,621	-				-0.5
4,499,621	-				+1.5
4,499,621	-				-0.5
4,499,621	-				-0.4
4,499,621	-				+3.1
4,499,718	-				+0.0
4,499,747	+				+2.1
4,499,831	+		Psyr_3782	0.23	+1.5
4,499,831	+		Psyr_3782	0.23	-0.7
4,499,864	+		Psyr_3782	0.41	-0.6
4,499,864	+		Psyr_3782	0.41	+0.5
4,499,865	-		Psyr_3782	0.41	-0.6
4,499,865	-		Psyr_3782	0.41	-0.5
4,499,948	-		Psyr_3782	0.84	-0.9
4,500,067	+				+0.0
4,500,067	+				-0.1
4,500,336	-		Psyr_3783	0.38	+0.1
4,500,343	+		Psyr_3783	0.40	+1.8
4,500,344	-		Psyr_3783	0.40	-0.7
4,500,344	-		Psyr_3783	0.40	-0.2
4,500,413	+		Psyr_3783	0.59	-0.0
4,500,414	-		Psyr_3783	0.59	+1.3