Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3711

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3709 and Psyr_3710 are separated by 27 nucleotidesPsyr_3710 and Psyr_3711 are separated by 172 nucleotidesPsyr_3711 and Psyr_3712 are separated by 569 nucleotides Psyr_3709: Psyr_3709 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,396,395 to 4,397,072 _3709 Psyr_3710: Psyr_3710 - conserved hypothetical protein, at 4,397,100 to 4,397,450 _3710 Psyr_3711: Psyr_3711 - Dienelactone hydrolase, at 4,397,623 to 4,398,411 _3711 Psyr_3712: Psyr_3712 - conserved hypothetical protein, at 4,398,981 to 4,399,514 _3712 Position (kb) 4397 4398 4399Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.780 kb on + strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strandat 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.258 kb on - strand, within Psyr_3710at 4397.450 kb on + strandat 4397.450 kb on + strandat 4397.450 kb on + strandat 4397.588 kb on + strandat 4397.588 kb on + strandat 4397.588 kb on + strandat 4397.734 kb on + strand, within Psyr_3711at 4397.735 kb on - strand, within Psyr_3711at 4397.737 kb on + strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.738 kb on - strand, within Psyr_3711at 4397.875 kb on + strandat 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.875 kb on + strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4397.876 kb on - strand, within Psyr_3711at 4398.248 kb on - strand, within Psyr_3711at 4398.402 kb on - strandat 4398.402 kb on - strandat 4398.429 kb on + strandat 4398.430 kb on - strandat 4398.450 kb on - strandat 4398.985 kb on + strandat 4398.986 kb on - strandat 4398.986 kb on - strandat 4399.042 kb on + strand, within Psyr_3712at 4399.070 kb on - strand, within Psyr_3712at 4399.070 kb on - strand, within Psyr_3712at 4399.070 kb on - strand, within Psyr_3712at 4399.099 kb on + strand, within Psyr_3712at 4399.099 kb on + strand, within Psyr_3712at 4399.100 kb on - strand, within Psyr_3712at 4399.100 kb on - strand, within Psyr_3712at 4399.257 kb on + strand, within Psyr_3712at 4399.258 kb on - strand, within Psyr_3712at 4399.286 kb on + strand, within Psyr_3712at 4399.286 kb on + strand, within Psyr_3712at 4399.286 kb on + strand, within Psyr_3712at 4399.287 kb on - strand, within Psyr_3712at 4399.287 kb on - strand, within Psyr_3712at 4399.287 kb on - strand, within Psyr_3712at 4399.359 kb on + strand, within Psyr_3712at 4399.359 kb on + strand, within Psyr_3712at 4399.360 kb on - strand, within Psyr_3712

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,396,777 - Psyr_3709 0.56 +0.9
4,396,777 - Psyr_3709 0.56 -0.5
4,396,777 - Psyr_3709 0.56 -2.7
4,396,780 + Psyr_3709 0.57 -0.3
4,396,781 - Psyr_3709 0.57 -0.8
4,396,781 - Psyr_3709 0.57 -0.2
4,396,781 - Psyr_3709 0.57 -0.7
4,396,961 - Psyr_3709 0.83 +1.2
4,396,961 - Psyr_3709 0.83 +0.5
4,396,961 - Psyr_3709 0.83 +0.1
4,397,135 + Psyr_3710 0.10 -0.5
4,397,135 + Psyr_3710 0.10 +0.0
4,397,135 + Psyr_3710 0.10 +1.5
4,397,179 + Psyr_3710 0.23 -0.1
4,397,179 + Psyr_3710 0.23 +0.4
4,397,179 + Psyr_3710 0.23 +0.2
4,397,179 + +0.5
4,397,179 + Psyr_3710 0.23 +1.4
4,397,179 + Psyr_3710 0.23 -0.7
4,397,180 - Psyr_3710 0.23 +0.2
4,397,180 - Psyr_3710 0.23 -0.4
4,397,180 - Psyr_3710 0.23 +3.0
4,397,180 - Psyr_3710 0.23 +2.5
4,397,180 - Psyr_3710 0.23 -0.4
4,397,180 - Psyr_3710 0.23 -0.6
4,397,258 - Psyr_3710 0.45 +1.5
4,397,450 + +0.9
4,397,450 + -0.4
4,397,450 + -0.3
4,397,588 + +0.7
4,397,588 + -1.6
4,397,588 + -1.7
4,397,734 + Psyr_3711 0.14 +1.3
4,397,735 - Psyr_3711 0.14 -0.1
4,397,737 + Psyr_3711 0.14 +0.5
4,397,738 - Psyr_3711 0.15 +1.7
4,397,738 - Psyr_3711 0.15 +0.1
4,397,738 - Psyr_3711 0.15 +0.0
4,397,738 - Psyr_3711 0.15 +0.3
4,397,875 + +1.5
4,397,875 + Psyr_3711 0.32 -0.6
4,397,875 + Psyr_3711 0.32 -0.6
4,397,875 + Psyr_3711 0.32 -1.6
4,397,875 + Psyr_3711 0.32 -0.9
4,397,875 + Psyr_3711 0.32 +1.5
4,397,876 - Psyr_3711 0.32 +0.8
4,397,876 - Psyr_3711 0.32 +1.3
4,397,876 - Psyr_3711 0.32 +0.5
4,397,876 - Psyr_3711 0.32 +0.5
4,397,876 - Psyr_3711 0.32 -0.4
4,398,248 - Psyr_3711 0.79 +0.1
4,398,402 - -0.6
4,398,402 - +0.7
4,398,429 + -0.6
4,398,430 - -0.5
4,398,450 - +0.2
4,398,985 + +3.8
4,398,986 - +0.5
4,398,986 - +2.1
4,399,042 + Psyr_3712 0.11 +2.8
4,399,070 - Psyr_3712 0.17 -0.5
4,399,070 - Psyr_3712 0.17 +2.5
4,399,070 - Psyr_3712 0.17 +0.3
4,399,099 + Psyr_3712 0.22 +2.7
4,399,099 + Psyr_3712 0.22 +0.9
4,399,100 - Psyr_3712 0.22 +0.5
4,399,100 - Psyr_3712 0.22 -0.6
4,399,257 + Psyr_3712 0.52 -0.8
4,399,258 - Psyr_3712 0.52 -1.1
4,399,286 + Psyr_3712 0.57 +0.3
4,399,286 + Psyr_3712 0.57 +0.6
4,399,286 + Psyr_3712 0.57 +0.0
4,399,287 - Psyr_3712 0.57 -2.2
4,399,287 - Psyr_3712 0.57 -0.4
4,399,287 - Psyr_3712 0.57 +0.5
4,399,359 + Psyr_3712 0.71 +1.1
4,399,359 + Psyr_3712 0.71 -0.7
4,399,360 - Psyr_3712 0.71 +0.3

Or see this region's nucleotide sequence