Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3702

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
4,389,027	+		Psyr_3700	0.51	+0.5
4,389,027	+		Psyr_3700	0.51	-0.3
4,389,118	-		Psyr_3700	0.74	+0.1
4,389,118	-		Psyr_3700	0.74	+0.1
4,389,150	+		Psyr_3700	0.81	+0.4
4,389,219	+				+0.1
4,389,219	+				+0.4
4,389,220	-				+1.0
4,389,220	-				-0.8
4,389,229	+				-0.8
4,389,229	+				+2.5
4,389,229	+				-1.8
4,389,229	+				+1.2
4,389,230	-				+0.3
4,389,230	-				-0.9
4,389,230	-				+1.5
4,389,233	+				-1.0
4,389,233	+				+0.7
4,389,234	-				-0.3
4,389,234	-				-0.9
4,389,254	-				-0.4
4,389,254	-				-0.2
4,389,370	-				-0.1
4,389,496	+		Psyr_3701	0.21	-1.1
4,389,497	-		Psyr_3701	0.22	+1.2
4,389,497	-		Psyr_3701	0.22	-0.5
4,389,497	-		Psyr_3701	0.22	-1.2
4,389,497	-		Psyr_3701	0.22	-2.0
4,389,533	-		Psyr_3701	0.29	+1.5
4,389,725	-		Psyr_3701	0.70	+0.5
4,389,897	+				+0.7
4,389,897	+				-0.4
4,389,897	+				+0.8
4,389,897	+				+0.2
4,389,897	+				+1.3
4,389,897	+				-1.6
4,389,897	+				+2.1
4,389,898	-				+3.1
4,389,898	-				-0.0
4,389,898	-				+2.1
4,389,898	-				-0.2
4,389,898	-				-0.5
4,389,898	-				+1.3
4,389,901	+				+0.5
4,389,901	+				-1.5
4,389,901	+				-0.1
4,389,901	+				+0.9
4,389,901	+				-1.6
4,389,901	+				+1.5
4,389,901	+				-0.3
4,389,902	-				+1.5
4,389,902	-				+0.1
4,389,904	-				+0.2
4,389,918	+				-0.1
4,389,933	-				+0.1
4,389,957	+				+1.0
4,389,962	+				-0.8
4,389,962	+				+1.5
4,390,010	+				+0.4
4,390,187	+		Psyr_3702	0.55	-0.2
4,390,187	+		Psyr_3702	0.55	-1.2
4,390,187	+		Psyr_3702	0.55	+0.2
4,390,188	-		Psyr_3702	0.55	+0.5
4,390,354	+				-2.3
4,390,354	+				-0.1
4,390,354	+				-0.3
4,390,354	+				-1.1
4,390,354	+				+1.8
4,390,354	+				+1.2
4,390,354	+				-0.4
4,390,354	+				-2.1
4,390,354	+				-0.2
4,390,355	-				-0.4
4,390,355	-				-0.2
4,390,355	-				-0.4
4,390,355	-				+0.8
4,390,355	-				-0.5
4,390,369	+				+2.1
4,390,369	+				+1.2
4,390,370	-				-0.5
4,390,370	-				+0.0
4,390,372	+				-2.8
4,390,373	-				-0.2
4,390,522	+		Psyr_3703	0.30	+0.5
4,390,609	+		Psyr_3703	0.44	+1.0
4,390,609	+		Psyr_3703	0.44	+1.8
4,390,609	+		Psyr_3703	0.44	+0.7
4,390,610	-		Psyr_3703	0.44	+0.8
4,390,610	-		Psyr_3703	0.44	+0.7
4,390,610	-		Psyr_3703	0.44	+2.1
4,390,677	+		Psyr_3703	0.55	+0.9
4,391,056	+				-0.6
4,391,056	+				-0.1
4,391,074	+				+2.4
4,391,074	+				-1.1
4,391,178	+		Psyr_3704	0.19	-3.0
4,391,179	-		Psyr_3704	0.20	+0.2
4,391,179	-		Psyr_3704	0.20	+1.5