Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3672

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3671 and Psyr_3672 are separated by 98 nucleotidesPsyr_3672 and Psyr_3673 are separated by 1 nucleotidesPsyr_3673 and Psyr_3674 overlap by 4 nucleotides Psyr_3671: Psyr_3671 - Major facilitator superfamily, at 4,357,799 to 4,359,007 _3671 Psyr_3672: Psyr_3672 - cobalamin-5'-phosphate synthase, at 4,359,106 to 4,359,837 _3672 Psyr_3673: Psyr_3673 - Phosphoglycerate/bisphosphoglycerate mutase, at 4,359,839 to 4,360,411 _3673 Psyr_3674: Psyr_3674 - Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 4,360,408 to 4,361,460 _3674 Position (kb) 4359 4360Strain fitness (log2 ratio) -2 -1 0 1 2at 4358.136 kb on - strandat 4358.136 kb on - strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.141 kb on + strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.142 kb on - strand, within Psyr_3671at 4358.145 kb on - strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.160 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.217 kb on + strand, within Psyr_3671at 4358.218 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.261 kb on - strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.298 kb on + strand, within Psyr_3671at 4358.433 kb on - strand, within Psyr_3671at 4358.542 kb on + strand, within Psyr_3671at 4358.543 kb on - strand, within Psyr_3671at 4358.602 kb on + strand, within Psyr_3671at 4358.754 kb on + strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4358.755 kb on - strand, within Psyr_3671at 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.032 kb on + strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.033 kb on - strandat 4359.169 kb on - strandat 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.368 kb on + strand, within Psyr_3672at 4359.369 kb on - strand, within Psyr_3672at 4359.647 kb on - strand, within Psyr_3672at 4359.737 kb on + strand, within Psyr_3672at 4360.002 kb on + strand, within Psyr_3673at 4360.002 kb on + strand, within Psyr_3673at 4360.087 kb on - strand, within Psyr_3673at 4360.087 kb on - strand, within Psyr_3673at 4360.490 kb on - strandat 4360.640 kb on - strand, within Psyr_3674at 4360.715 kb on + strand, within Psyr_3674

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,358,136 - -1.5
4,358,136 - Psyr_3671 0.28 +1.0
4,358,141 + Psyr_3671 0.28 -0.8
4,358,141 + Psyr_3671 0.28 +0.2
4,358,141 + Psyr_3671 0.28 -0.5
4,358,142 - Psyr_3671 0.28 +0.7
4,358,142 - Psyr_3671 0.28 -0.1
4,358,142 - Psyr_3671 0.28 +0.0
4,358,142 - Psyr_3671 0.28 -0.7
4,358,145 - Psyr_3671 0.29 -0.5
4,358,160 + Psyr_3671 0.30 -0.3
4,358,160 + Psyr_3671 0.30 -0.5
4,358,217 + Psyr_3671 0.35 +2.3
4,358,217 + Psyr_3671 0.35 +0.4
4,358,218 - Psyr_3671 0.35 -0.3
4,358,261 - Psyr_3671 0.38 +0.7
4,358,261 - Psyr_3671 0.38 -0.3
4,358,298 + Psyr_3671 0.41 +1.8
4,358,298 + Psyr_3671 0.41 +0.6
4,358,433 - Psyr_3671 0.52 -1.3
4,358,542 + Psyr_3671 0.61 +0.8
4,358,543 - Psyr_3671 0.62 +0.3
4,358,602 + Psyr_3671 0.66 -2.0
4,358,754 + Psyr_3671 0.79 -1.1
4,358,755 - Psyr_3671 0.79 +0.9
4,358,755 - Psyr_3671 0.79 -0.8
4,358,755 - Psyr_3671 0.79 -0.5
4,359,032 + -0.3
4,359,032 + -0.1
4,359,032 + -0.0
4,359,032 + -0.4
4,359,032 + -0.8
4,359,032 + +0.0
4,359,032 + +0.1
4,359,033 - +2.5
4,359,033 - -0.1
4,359,033 - +0.6
4,359,033 - -2.1
4,359,169 - +0.1
4,359,368 + Psyr_3672 0.36 +1.5
4,359,368 + Psyr_3672 0.36 -1.4
4,359,368 + Psyr_3672 0.36 -0.5
4,359,368 + Psyr_3672 0.36 -0.8
4,359,368 + Psyr_3672 0.36 -0.5
4,359,369 - Psyr_3672 0.36 +0.5
4,359,647 - Psyr_3672 0.74 +0.7
4,359,737 + Psyr_3672 0.86 +0.2
4,360,002 + Psyr_3673 0.28 -2.1
4,360,002 + Psyr_3673 0.28 +0.9
4,360,087 - Psyr_3673 0.43 -1.8
4,360,087 - Psyr_3673 0.43 -0.1
4,360,490 - -0.5
4,360,640 - Psyr_3674 0.22 +0.4
4,360,715 + Psyr_3674 0.29 -0.2

Or see this region's nucleotide sequence