Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3600 and Psyr_3601 are separated by 138 nucleotides Psyr_3601 and Psyr_3602 overlap by 4 nucleotides
Psyr_3600: Psyr_3600 - transcriptional regulator, LysR family, at 4,281,346 to 4,282,314
_3600
Psyr_3601: Psyr_3601 - conserved hypothetical protein, at 4,282,453 to 4,283,064
_3601
Psyr_3602: Psyr_3602 - Rhodanese-like protein, at 4,283,061 to 4,284,644
_3602
Position (kb) 4282
4283
4284 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4281.796 kb on + strand, within Psyr_3600 at 4281.796 kb on + strand, within Psyr_3600 at 4281.797 kb on - strand, within Psyr_3600 at 4281.797 kb on - strand, within Psyr_3600 at 4282.098 kb on + strand, within Psyr_3600 at 4282.236 kb on + strand at 4282.237 kb on - strand at 4282.277 kb on - strand at 4282.295 kb on + strand at 4282.316 kb on - strand at 4282.357 kb on - strand at 4282.357 kb on - strand at 4282.401 kb on + strand at 4282.619 kb on + strand, within Psyr_3601 at 4282.969 kb on + strand, within Psyr_3601 at 4283.260 kb on - strand, within Psyr_3602 at 4283.518 kb on - strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 4,281,796 + Psyr_3600 0.46 +0.2 4,281,796 + Psyr_3600 0.46 +0.7 4,281,797 - Psyr_3600 0.47 -0.7 4,281,797 - Psyr_3600 0.47 -0.8 4,282,098 + Psyr_3600 0.78 +3.0 4,282,236 + -1.8 4,282,237 - -0.8 4,282,277 - -0.4 4,282,295 + +0.4 4,282,316 - -1.4 4,282,357 - +2.4 4,282,357 - +1.7 4,282,401 + -0.4 4,282,619 + Psyr_3601 0.27 +0.0 4,282,969 + Psyr_3601 0.84 -1.4 4,283,260 - Psyr_3602 0.13 +1.0 4,283,518 - Psyr_3602 0.29 -0.6 4,283,904 + Psyr_3602 0.53 +0.8 4,283,904 + Psyr_3602 0.53 -0.9 4,283,904 + Psyr_3602 0.53 -1.5 4,283,905 - Psyr_3602 0.53 +0.6 4,283,905 - Psyr_3602 0.53 +1.4 4,283,905 - Psyr_3602 0.53 +0.0 4,283,905 - Psyr_3602 0.53 -0.4 4,283,905 - Psyr_3602 0.53 -0.2 4,283,917 + Psyr_3602 0.54 +0.2 4,283,918 - Psyr_3602 0.54 -0.2 4,283,918 - Psyr_3602 0.54 +1.0 4,283,918 - Psyr_3602 0.54 +0.8
Or see this region's nucleotide sequence