Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3524

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
4,199,419	+		Psyr_3523	0.26	-1.1
4,199,420	-		Psyr_3523	0.26	+1.8
4,199,815	+		Psyr_3523	0.60	+0.0
4,199,816	-		Psyr_3523	0.60	+1.8
4,200,284	+				-2.2
4,200,284	+				-2.3
4,200,284	+				+0.5
4,200,362	+				-0.8
4,200,362	+				+0.7
4,200,413	+				+0.3
4,200,441	+		Psyr_3524	0.10	+1.4
4,200,441	+				+3.4
4,200,441	+		Psyr_3524	0.10	-1.2
4,200,441	+		Psyr_3524	0.10	-1.2
4,200,441	+		Psyr_3524	0.10	-0.1
4,200,441	+		Psyr_3524	0.10	+3.0
4,200,442	-		Psyr_3524	0.10	-0.0
4,200,442	-		Psyr_3524	0.10	-0.3
4,200,442	-				+0.4
4,200,449	+		Psyr_3524	0.11	-2.2
4,200,635	+		Psyr_3524	0.23	+1.0
4,200,636	-		Psyr_3524	0.23	-0.7
4,200,636	-		Psyr_3524	0.23	-0.4
4,200,636	-		Psyr_3524	0.23	-0.1
4,200,674	+		Psyr_3524	0.26	-1.6
4,200,674	+		Psyr_3524	0.26	+2.5
4,200,674	+		Psyr_3524	0.26	-0.9
4,200,674	+		Psyr_3524	0.26	-0.9
4,200,674	+		Psyr_3524	0.26	+0.6
4,200,674	+		Psyr_3524	0.26	+1.0
4,200,674	+		Psyr_3524	0.26	+0.6
4,200,674	+		Psyr_3524	0.26	+0.2
4,200,674	+		Psyr_3524	0.26	-0.1
4,200,674	+		Psyr_3524	0.26	+0.7
4,200,675	-		Psyr_3524	0.26	+0.3
4,200,675	-		Psyr_3524	0.26	-0.5
4,200,675	-		Psyr_3524	0.26	-0.3
4,200,675	-		Psyr_3524	0.26	-0.2
4,200,675	-		Psyr_3524	0.26	-0.2
4,200,675	-		Psyr_3524	0.26	-0.9
4,200,675	-		Psyr_3524	0.26	+1.4
4,200,675	-		Psyr_3524	0.26	-1.7
4,200,675	-		Psyr_3524	0.26	-0.5
4,200,675	-		Psyr_3524	0.26	+0.5
4,200,675	-		Psyr_3524	0.26	+0.4
4,200,770	+		Psyr_3524	0.32	+2.4
4,200,770	+		Psyr_3524	0.32	+1.2
4,200,770	+		Psyr_3524	0.32	+0.6
4,200,770	+		Psyr_3524	0.32	+1.4
4,200,771	-		Psyr_3524	0.32	+0.6
4,200,771	-		Psyr_3524	0.32	-0.7
4,201,321	-		Psyr_3524	0.68	-0.1
4,201,349	+		Psyr_3524	0.70	+1.8
4,201,349	+		Psyr_3524	0.70	-0.2
4,201,358	+		Psyr_3524	0.71	-0.6
4,201,358	+		Psyr_3524	0.71	+0.7
4,201,358	+		Psyr_3524	0.71	+0.2
4,201,358	+		Psyr_3524	0.71	-0.8
4,201,358	+		Psyr_3524	0.71	-0.5
4,201,358	+		Psyr_3524	0.71	-0.9
4,201,358	+		Psyr_3524	0.71	-0.3
4,201,358	+		Psyr_3524	0.71	-1.8
4,201,359	-		Psyr_3524	0.71	+0.3
4,201,359	-		Psyr_3524	0.71	-0.2
4,201,359	-		Psyr_3524	0.71	-0.9
4,201,359	-		Psyr_3524	0.71	-0.2
4,201,359	-		Psyr_3524	0.71	-1.6
4,201,359	-		Psyr_3524	0.71	+0.8
4,201,359	-		Psyr_3524	0.71	-0.8
4,201,359	-		Psyr_3524	0.71	+0.3
4,201,359	-		Psyr_3524	0.71	-1.5
4,201,359	-		Psyr_3524	0.71	+1.0
4,201,359	-		Psyr_3524	0.71	-0.4
4,201,359	-		Psyr_3524	0.71	+0.2
4,201,359	-		Psyr_3524	0.71	+0.6
4,201,359	-		Psyr_3524	0.71	+1.1
4,201,421	+		Psyr_3524	0.75	+0.4
4,201,421	+		Psyr_3524	0.75	+1.4
4,201,422	-		Psyr_3524	0.75	+0.4
4,201,422	-		Psyr_3524	0.75	+0.4
4,201,422	-		Psyr_3524	0.75	-0.8
4,201,424	+		Psyr_3524	0.75	+0.7
4,201,425	-		Psyr_3524	0.75	+0.7
4,201,425	-		Psyr_3524	0.75	+2.4
4,201,547	+		Psyr_3524	0.83	-1.4
4,201,547	+		Psyr_3524	0.83	+0.2
4,201,548	-		Psyr_3524	0.83	-0.4
4,201,548	-		Psyr_3524	0.83	-0.2
4,201,548	-		Psyr_3524	0.83	+0.9
4,201,548	-		Psyr_3524	0.83	+0.9
4,201,548	-		Psyr_3524	0.83	+0.7
4,201,733	+				-0.3
4,201,733	+				-0.8
4,201,733	+				+0.2
4,201,733	+				-1.4
4,201,733	+				-1.3
4,201,734	-				+1.0
4,201,734	-				+0.2
4,201,734	-				+1.1
4,201,734	-				+1.1
4,201,734	-				-0.4
4,201,805	+				+1.3
4,201,806	-				-0.0
4,202,006	+		Psyr_3525	0.23	+1.1
4,202,006	+		Psyr_3525	0.23	+0.5
4,202,007	-		Psyr_3525	0.23	-1.2
4,202,007	-		Psyr_3525	0.23	+0.2
4,202,424	+		Psyr_3525	0.70	-1.7
4,202,727	+				-1.2