Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3491

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3489 and Psyr_3490 are separated by 82 nucleotidesPsyr_3490 and Psyr_3491 are separated by 62 nucleotidesPsyr_3491 and Psyr_3492 are separated by 54 nucleotides Psyr_3489: Psyr_3489 - FlgN, at 4,158,023 to 4,158,490 _3489 Psyr_3490: Psyr_3490 - conserved hypothetical protein, at 4,158,573 to 4,159,319 _3490 Psyr_3491: Psyr_3491 - Major facilitator superfamily, at 4,159,382 to 4,160,803 _3491 Psyr_3492: Psyr_3492 - L-glutamine synthetase, at 4,160,858 to 4,162,201 _3492 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.425 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.457 kb on + strandat 4158.489 kb on - strandat 4158.499 kb on - strandat 4158.547 kb on - strandat 4158.549 kb on + strandat 4158.549 kb on + strandat 4158.623 kb on + strandat 4158.623 kb on + strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.686 kb on + strand, within Psyr_3490at 4158.687 kb on - strand, within Psyr_3490at 4158.687 kb on - strand, within Psyr_3490at 4158.720 kb on + strand, within Psyr_3490at 4158.720 kb on + strand, within Psyr_3490at 4158.721 kb on - strand, within Psyr_3490at 4158.721 kb on - strand, within Psyr_3490at 4158.860 kb on + strand, within Psyr_3490at 4158.861 kb on - strand, within Psyr_3490at 4158.861 kb on - strand, within Psyr_3490at 4158.903 kb on + strand, within Psyr_3490at 4158.904 kb on - strand, within Psyr_3490at 4158.904 kb on - strand, within Psyr_3490at 4158.934 kb on - strand, within Psyr_3490at 4159.044 kb on - strand, within Psyr_3490at 4159.111 kb on + strand, within Psyr_3490at 4159.111 kb on + strand, within Psyr_3490at 4159.113 kb on + strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.269 kb on + strandat 4159.276 kb on + strandat 4159.276 kb on + strandat 4159.277 kb on - strandat 4159.377 kb on - strandat 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.734 kb on + strand, within Psyr_3491at 4159.734 kb on + strand, within Psyr_3491at 4159.735 kb on - strand, within Psyr_3491at 4159.806 kb on + strand, within Psyr_3491at 4159.806 kb on + strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.134 kb on - strand, within Psyr_3491at 4160.183 kb on + strand, within Psyr_3491at 4160.373 kb on - strand, within Psyr_3491at 4160.385 kb on + strand, within Psyr_3491at 4160.386 kb on - strand, within Psyr_3491at 4160.386 kb on - strand, within Psyr_3491at 4160.400 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.594 kb on - strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.722 kb on - strandat 4160.769 kb on + strandat 4160.769 kb on + strandat 4160.898 kb on - strandat 4160.943 kb on + strandat 4160.944 kb on - strandat 4160.944 kb on - strandat 4161.022 kb on + strand, within Psyr_3492at 4161.023 kb on - strand, within Psyr_3492at 4161.023 kb on - strand, within Psyr_3492at 4161.138 kb on + strand, within Psyr_3492at 4161.209 kb on + strand, within Psyr_3492at 4161.209 kb on + strand, within Psyr_3492at 4161.210 kb on - strand, within Psyr_3492at 4161.262 kb on - strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,158,424 + Psyr_3489 0.86 -0.6
4,158,424 + Psyr_3489 0.86 -0.4
4,158,424 + Psyr_3489 0.86 -2.3
4,158,424 + Psyr_3489 0.86 -1.0
4,158,425 - Psyr_3489 0.86 +3.7
4,158,432 - Psyr_3489 0.87 -3.2
4,158,432 - Psyr_3489 0.87 -0.6
4,158,432 - Psyr_3489 0.87 -0.3
4,158,457 + -1.9
4,158,489 - -0.8
4,158,499 - -1.0
4,158,547 - +0.1
4,158,549 + +0.0
4,158,549 + -2.3
4,158,623 + -1.3
4,158,623 + +1.1
4,158,624 - -1.1
4,158,624 - +1.4
4,158,624 - -0.6
4,158,624 - +0.4
4,158,624 - -2.0
4,158,686 + Psyr_3490 0.15 +2.4
4,158,687 - Psyr_3490 0.15 -0.3
4,158,687 - Psyr_3490 0.15 +1.0
4,158,720 + Psyr_3490 0.20 +1.0
4,158,720 + Psyr_3490 0.20 -0.2
4,158,721 - Psyr_3490 0.20 -0.1
4,158,721 - Psyr_3490 0.20 +0.2
4,158,860 + Psyr_3490 0.38 +0.8
4,158,861 - Psyr_3490 0.39 +0.3
4,158,861 - Psyr_3490 0.39 +1.4
4,158,903 + Psyr_3490 0.44 +0.6
4,158,904 - Psyr_3490 0.44 -0.5
4,158,904 - Psyr_3490 0.44 +0.4
4,158,934 - Psyr_3490 0.48 +0.4
4,159,044 - Psyr_3490 0.63 +2.0
4,159,111 + Psyr_3490 0.72 +1.4
4,159,111 + Psyr_3490 0.72 +0.2
4,159,113 + Psyr_3490 0.72 +0.8
4,159,114 - Psyr_3490 0.72 -0.6
4,159,114 - Psyr_3490 0.72 +0.3
4,159,114 - Psyr_3490 0.72 -2.0
4,159,114 - Psyr_3490 0.72 -0.5
4,159,114 - Psyr_3490 0.72 +0.4
4,159,269 + +0.4
4,159,276 + -0.7
4,159,276 + -0.7
4,159,277 - +0.3
4,159,377 - -1.6
4,159,618 + Psyr_3491 0.17 -1.0
4,159,618 + Psyr_3491 0.17 -0.5
4,159,618 + Psyr_3491 0.17 +0.9
4,159,618 + Psyr_3491 0.17 -1.4
4,159,618 + Psyr_3491 0.17 -1.0
4,159,618 + Psyr_3491 0.17 +0.8
4,159,618 + Psyr_3491 0.17 +0.2
4,159,618 + Psyr_3491 0.17 -1.5
4,159,619 - Psyr_3491 0.17 -1.0
4,159,619 - Psyr_3491 0.17 +0.4
4,159,619 - Psyr_3491 0.17 +1.0
4,159,619 - Psyr_3491 0.17 -0.4
4,159,619 - Psyr_3491 0.17 -0.1
4,159,619 - Psyr_3491 0.17 -3.4
4,159,734 + Psyr_3491 0.25 +0.2
4,159,734 + Psyr_3491 0.25 -0.2
4,159,735 - Psyr_3491 0.25 -0.6
4,159,806 + Psyr_3491 0.30 +1.8
4,159,806 + Psyr_3491 0.30 +0.7
4,159,807 - Psyr_3491 0.30 +0.1
4,159,807 - Psyr_3491 0.30 +0.6
4,159,807 - Psyr_3491 0.30 -2.4
4,160,002 + Psyr_3491 0.44 +1.4
4,160,002 + Psyr_3491 0.44 +0.9
4,160,002 + Psyr_3491 0.44 +0.8
4,160,003 - Psyr_3491 0.44 -0.6
4,160,003 - Psyr_3491 0.44 -0.1
4,160,134 - Psyr_3491 0.53 -0.0
4,160,183 + Psyr_3491 0.56 -0.8
4,160,373 - Psyr_3491 0.70 -0.1
4,160,385 + Psyr_3491 0.71 -0.2
4,160,386 - Psyr_3491 0.71 -0.8
4,160,386 - Psyr_3491 0.71 -0.7
4,160,400 + Psyr_3491 0.72 -0.2
4,160,469 + Psyr_3491 0.76 +0.1
4,160,469 + Psyr_3491 0.76 +0.5
4,160,469 + Psyr_3491 0.76 -2.4
4,160,469 + Psyr_3491 0.76 -0.1
4,160,469 + Psyr_3491 0.76 +0.6
4,160,469 + Psyr_3491 0.76 -2.0
4,160,469 + Psyr_3491 0.76 -2.1
4,160,469 + Psyr_3491 0.76 +0.5
4,160,469 + Psyr_3491 0.76 -0.7
4,160,469 + Psyr_3491 0.76 +0.3
4,160,469 + Psyr_3491 0.76 -1.2
4,160,470 - Psyr_3491 0.77 -0.3
4,160,470 - Psyr_3491 0.77 +1.1
4,160,470 - Psyr_3491 0.77 +2.4
4,160,470 - Psyr_3491 0.77 -1.8
4,160,470 - Psyr_3491 0.77 +1.4
4,160,470 - Psyr_3491 0.77 -0.8
4,160,470 - Psyr_3491 0.77 -0.8
4,160,470 - Psyr_3491 0.77 +0.0
4,160,470 - Psyr_3491 0.77 -0.7
4,160,470 - Psyr_3491 0.77 -2.0
4,160,470 - Psyr_3491 0.77 +2.4
4,160,470 - Psyr_3491 0.77 -2.2
4,160,594 - Psyr_3491 0.85 +0.8
4,160,652 + Psyr_3491 0.89 +1.0
4,160,652 + Psyr_3491 0.89 -0.2
4,160,652 + Psyr_3491 0.89 -1.6
4,160,653 - Psyr_3491 0.89 +0.9
4,160,653 - Psyr_3491 0.89 -0.3
4,160,653 - Psyr_3491 0.89 +0.4
4,160,721 + -0.6
4,160,721 + -1.8
4,160,721 + -1.3
4,160,721 + -1.4
4,160,721 + +1.4
4,160,721 + +0.5
4,160,722 - -1.4
4,160,769 + -0.4
4,160,769 + +0.1
4,160,898 - +0.6
4,160,943 + +0.2
4,160,944 - -1.7
4,160,944 - -0.2
4,161,022 + Psyr_3492 0.12 -0.1
4,161,023 - Psyr_3492 0.12 +2.0
4,161,023 - Psyr_3492 0.12 -1.4
4,161,138 + Psyr_3492 0.21 -0.2
4,161,209 + Psyr_3492 0.26 -1.4
4,161,209 + Psyr_3492 0.26 -0.4
4,161,210 - Psyr_3492 0.26 -0.9
4,161,262 - Psyr_3492 0.30 +0.7
4,161,392 + Psyr_3492 0.40 -0.3
4,161,392 + Psyr_3492 0.40 -0.3
4,161,392 + Psyr_3492 0.40 -2.5
4,161,393 - Psyr_3492 0.40 -2.9
4,161,393 - Psyr_3492 0.40 -0.2
4,161,393 - Psyr_3492 0.40 +0.1
4,161,393 - Psyr_3492 0.40 +0.1
4,161,651 + Psyr_3492 0.59 +0.4
4,161,651 + Psyr_3492 0.59 +0.2
4,161,651 + Psyr_3492 0.59 +0.1
4,161,651 + Psyr_3492 0.59 -0.2
4,161,651 + Psyr_3492 0.59 -1.0
4,161,651 + Psyr_3492 0.59 +0.5
4,161,651 + Psyr_3492 0.59 -0.1
4,161,651 + Psyr_3492 0.59 +1.1
4,161,652 - Psyr_3492 0.59 -1.0
4,161,652 - Psyr_3492 0.59 +1.6
4,161,652 - Psyr_3492 0.59 -0.4
4,161,652 - Psyr_3492 0.59 +2.4
4,161,652 - Psyr_3492 0.59 +2.1
4,161,652 - Psyr_3492 0.59 -0.2
4,161,652 - Psyr_3492 0.59 +0.8
4,161,652 - Psyr_3492 0.59 -1.0

Or see this region's nucleotide sequence