Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3361

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
4,017,989	+		Psyr_3360	0.37	+1.8
4,017,990	-		Psyr_3360	0.37	-1.8
4,018,025	-		Psyr_3360	0.40	+1.0
4,018,063	+		Psyr_3360	0.43	-0.2
4,018,064	-		Psyr_3360	0.43	+0.1
4,018,064	-		Psyr_3360	0.43	-1.0
4,018,064	-		Psyr_3360	0.43	+0.4
4,018,150	+		Psyr_3360	0.51	+0.4
4,018,150	+		Psyr_3360	0.51	-1.3
4,018,151	-		Psyr_3360	0.51	-0.1
4,018,601	+		Psyr_3360	0.90	+0.7
4,018,601	+		Psyr_3360	0.90	+1.4
4,018,601	+		Psyr_3360	0.90	+0.1
4,018,601	+		Psyr_3360	0.90	-0.9
4,018,602	-		Psyr_3360	0.90	+0.8
4,018,732	+				+0.2
4,018,732	+				-1.2
4,018,733	-				+0.8
4,018,773	-				+1.1
4,018,789	+				+0.1
4,018,811	+				+0.4
4,018,812	-				-1.5
4,018,812	-				-1.0
4,018,878	+				-0.3
4,018,947	+				+1.5
4,018,948	-				+2.9
4,018,948	-				-1.7
4,018,979	+				-1.6
4,018,980	-				+1.4
4,018,998	+				-0.6
4,018,998	+				+0.5
4,018,998	+				-2.2
4,018,998	+				-0.1
4,018,998	+				-0.6
4,018,998	+				+2.7
4,018,998	+				-0.4
4,018,999	-				+0.4
4,018,999	-				-0.4
4,018,999	-				+0.4
4,018,999	-				-1.0
4,018,999	-				+1.6
4,018,999	-				+0.2
4,018,999	-				+0.3
4,018,999	-				+0.6
4,018,999	-				+1.4
4,018,999	-				-1.1
4,018,999	-				-1.3
4,018,999	-				+1.4
4,018,999	-				-1.1
4,018,999	-				+0.7
4,018,999	-				+1.7
4,018,999	-				-1.2
4,018,999	-				-0.2
4,019,004	+				+0.7
4,019,005	-				+1.7
4,019,005	-				-0.2
4,019,005	-				-0.4
4,019,006	+				-0.9
4,019,006	+				-0.4
4,019,006	+				+0.8
4,019,006	+				+0.4
4,019,007	-				-0.8
4,019,007	-				+2.4
4,019,007	-				+3.7
4,019,007	-				+0.2
4,019,007	-				+0.8
4,019,007	-				-0.4
4,019,245	+		Psyr_3361	0.34	-0.5
4,019,256	+		Psyr_3361	0.35	+0.6
4,019,257	-		Psyr_3361	0.35	+0.8
4,019,301	+		Psyr_3361	0.40	-0.4
4,019,302	-		Psyr_3361	0.40	-1.8
4,019,319	+		Psyr_3361	0.42	+1.4
4,019,430	+		Psyr_3361	0.55	+0.9
4,019,431	-		Psyr_3361	0.55	+0.4
4,019,431	-		Psyr_3361	0.55	-1.1
4,019,565	+		Psyr_3361	0.70	-2.6
4,019,566	-		Psyr_3361	0.70	-0.2
4,019,616	+		Psyr_3361	0.76	-0.5
4,019,617	-		Psyr_3361	0.76	+0.1
4,019,617	-		Psyr_3361	0.76	+0.2
4,019,667	+		Psyr_3361	0.82	-0.4
4,019,667	+		Psyr_3361	0.82	-1.8
4,019,667	+		Psyr_3361	0.82	-0.6
4,019,668	-		Psyr_3361	0.82	-1.3
4,019,668	-		Psyr_3361	0.82	+0.7
4,019,742	+				-0.4
4,019,742	+				-2.1
4,019,743	-				-0.3
4,019,743	-				+1.9
4,019,743	-				+0.2
4,019,743	-				+0.6
4,019,795	+				-1.4
4,019,795	+				-0.2
4,019,795	+				+1.1
4,019,795	+				+0.8
4,019,795	+				+1.1
4,019,795	+				+1.4
4,019,795	+				-1.3
4,019,796	-				+1.4
4,019,796	-				-1.2
4,019,905	+				-0.2
4,019,906	-				-2.3
4,019,917	+				+0.4
4,019,917	+				-1.1
4,019,917	+				+0.5
4,019,918	-				-0.0
4,019,918	-				+1.4
4,019,918	-				-0.1
4,019,950	+		Psyr_3362	0.11	-0.6
4,019,950	+		Psyr_3362	0.11	+0.0
4,019,950	+		Psyr_3362	0.11	+0.4
4,019,950	+		Psyr_3362	0.11	-1.1
4,019,950	+		Psyr_3362	0.11	+0.4
4,019,951	-		Psyr_3362	0.11	+0.4
4,019,951	-		Psyr_3362	0.11	-0.1
4,019,951	-		Psyr_3362	0.11	-0.2
4,019,951	-		Psyr_3362	0.11	-0.0
4,019,951	-		Psyr_3362	0.11	-1.0
4,019,951	-		Psyr_3362	0.11	-0.2
4,019,971	+		Psyr_3362	0.12	-0.6
4,019,971	+		Psyr_3362	0.12	+2.4
4,019,972	-		Psyr_3362	0.13	-2.2
4,020,427	+		Psyr_3362	0.53	-0.0
4,020,428	-		Psyr_3362	0.53	+0.4
4,020,428	-		Psyr_3362	0.53	+0.4
4,020,484	+		Psyr_3362	0.58	+0.6
4,020,484	+		Psyr_3362	0.58	-2.3
4,020,484	+		Psyr_3362	0.58	-0.0
4,020,484	+		Psyr_3362	0.58	+0.4
4,020,484	+		Psyr_3362	0.58	+2.6
4,020,484	+		Psyr_3362	0.58	+0.4
4,020,484	+		Psyr_3362	0.58	+0.2
4,020,485	-		Psyr_3362	0.59	+0.0
4,020,485	-		Psyr_3362	0.59	+0.1
4,020,485	-		Psyr_3362	0.59	+0.3
4,020,485	-		Psyr_3362	0.59	-1.3
4,020,485	-		Psyr_3362	0.59	-0.5
4,020,485	-		Psyr_3362	0.59	+0.6
4,020,485	-		Psyr_3362	0.59	+0.2
4,020,485	-		Psyr_3362	0.59	+0.9
4,020,485	-		Psyr_3362	0.59	-0.5
4,020,485	-		Psyr_3362	0.59	+1.4
4,020,486	+		Psyr_3362	0.59	+0.8
4,020,486	+		Psyr_3362	0.59	+1.7
4,020,487	-		Psyr_3362	0.59	-0.3
4,020,487	-		Psyr_3362	0.59	-2.3
4,020,665	+		Psyr_3362	0.75	-1.2
4,020,665	+		Psyr_3362	0.75	+0.1
4,020,665	+		Psyr_3362	0.75	-1.6
4,020,666	-		Psyr_3362	0.75	+0.0
4,020,802	+		Psyr_3362	0.87	-0.1