Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3307

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
3,957,105	+		Psyr_3306	0.25	-0.2
3,957,301	-		Psyr_3306	0.40	+1.1
3,957,381	+		Psyr_3306	0.46	+0.5
3,957,381	+		Psyr_3306	0.46	+0.1
3,957,381	+		Psyr_3306	0.46	+0.3
3,957,381	+		Psyr_3306	0.46	+0.1
3,957,382	-		Psyr_3306	0.46	-1.5
3,957,382	-		Psyr_3306	0.46	-1.3
3,957,382	-		Psyr_3306	0.46	+1.1
3,957,384	+		Psyr_3306	0.46	+0.7
3,957,384	+		Psyr_3306	0.46	-0.6
3,957,384	+		Psyr_3306	0.46	+0.2
3,957,385	-		Psyr_3306	0.46	-1.1
3,957,385	-		Psyr_3306	0.46	-1.2
3,957,385	-		Psyr_3306	0.46	+0.8
3,957,385	-		Psyr_3306	0.46	+1.7
3,957,412	-		Psyr_3306	0.48	+0.9
3,957,606	+		Psyr_3306	0.63	-0.3
3,957,606	+		Psyr_3306	0.63	+0.2
3,957,607	-		Psyr_3306	0.63	+0.6
3,957,660	+		Psyr_3306	0.67	-0.1
3,957,660	+		Psyr_3306	0.67	+0.0
3,957,660	+		Psyr_3306	0.67	-0.5
3,957,661	-		Psyr_3306	0.67	-0.2
3,957,804	+		Psyr_3306	0.78	-3.5
3,957,804	+		Psyr_3306	0.78	+0.5
3,957,804	+		Psyr_3306	0.78	-0.1
3,957,804	+		Psyr_3306	0.78	-2.5
3,957,804	+		Psyr_3306	0.78	-0.8
3,957,804	+		Psyr_3306	0.78	+1.1
3,957,804	+		Psyr_3306	0.78	-0.0
3,957,805	-		Psyr_3306	0.78	-0.5
3,957,805	-		Psyr_3306	0.78	+2.4
3,957,805	-		Psyr_3306	0.78	-1.4
3,957,881	-		Psyr_3306	0.84	+0.5
3,957,894	+		Psyr_3306	0.85	-1.8
3,957,895	-		Psyr_3306	0.85	+1.4
3,958,165	-				+0.8
3,958,317	-		Psyr_3307	0.18	+0.0
3,958,446	+		Psyr_3307	0.29	-0.6
3,958,446	+		Psyr_3307	0.29	-0.0
3,958,446	+		Psyr_3307	0.29	-1.7
3,958,446	+		Psyr_3307	0.29	+0.4
3,958,446	+		Psyr_3307	0.29	-0.1
3,958,446	+		Psyr_3307	0.29	-1.6
3,958,447	-		Psyr_3307	0.29	-0.9
3,958,447	-		Psyr_3307	0.29	+0.3
3,958,447	-		Psyr_3307	0.29	+1.0
3,958,447	-		Psyr_3307	0.29	-2.5
3,958,447	-		Psyr_3307	0.29	+0.3
3,958,447	-		Psyr_3307	0.29	+0.5
3,958,447	-		Psyr_3307	0.29	+0.2
3,958,447	-		Psyr_3307	0.29	-0.5
3,958,447	-		Psyr_3307	0.29	+0.4
3,958,447	-		Psyr_3307	0.29	-0.1
3,958,447	-		Psyr_3307	0.29	-1.4
3,958,542	+		Psyr_3307	0.36	-0.5
3,958,542	+		Psyr_3307	0.36	-0.1
3,958,581	+		Psyr_3307	0.40	-0.1
3,958,582	-		Psyr_3307	0.40	+1.2
3,958,669	+		Psyr_3307	0.47	+0.3
3,958,670	-		Psyr_3307	0.47	+3.0
3,958,701	+		Psyr_3307	0.50	-1.2
3,958,701	+		Psyr_3307	0.50	-1.6
3,958,701	+		Psyr_3307	0.50	+0.4
3,958,702	-		Psyr_3307	0.50	-0.7
3,958,702	-		Psyr_3307	0.50	-1.8
3,958,702	-		Psyr_3307	0.50	-0.2
3,958,702	-		Psyr_3307	0.50	-1.9
3,958,702	-		Psyr_3307	0.50	-0.6
3,958,728	+		Psyr_3307	0.52	-0.6
3,958,729	-		Psyr_3307	0.52	-1.2
3,958,729	-		Psyr_3307	0.52	-2.4
3,958,732	-		Psyr_3307	0.52	-1.6
3,958,732	-		Psyr_3307	0.52	+0.6
3,958,785	+		Psyr_3307	0.56	-0.6
3,958,785	+		Psyr_3307	0.56	-0.1
3,958,785	+		Psyr_3307	0.56	-1.9
3,958,785	+		Psyr_3307	0.56	-0.4
3,958,785	+		Psyr_3307	0.56	-0.2
3,958,786	-		Psyr_3307	0.56	-1.6
3,958,786	-		Psyr_3307	0.56	-0.0
3,958,786	-		Psyr_3307	0.56	-0.9
3,958,786	-		Psyr_3307	0.56	-1.2
3,958,786	-		Psyr_3307	0.56	+1.0
3,958,786	-		Psyr_3307	0.56	+0.7
3,958,791	+		Psyr_3307	0.57	+1.4
3,958,867	+		Psyr_3307	0.63	-0.2
3,958,867	+		Psyr_3307	0.63	-0.9
3,958,867	+		Psyr_3307	0.63	+2.4
3,958,867	+		Psyr_3307	0.63	-1.1
3,958,868	-		Psyr_3307	0.63	-3.1
3,958,868	-		Psyr_3307	0.63	-0.9
3,958,868	-		Psyr_3307	0.63	-1.7
3,958,868	-		Psyr_3307	0.63	-0.5
3,958,868	-		Psyr_3307	0.63	-0.7
3,958,868	-		Psyr_3307	0.63	-1.4
3,959,115	+		Psyr_3307	0.83	-0.7
3,959,115	+		Psyr_3307	0.83	+1.1
3,959,116	-		Psyr_3307	0.84	-0.3
3,959,116	-		Psyr_3307	0.84	-1.1
3,959,116	-		Psyr_3307	0.84	+0.7
3,959,163	+		Psyr_3307	0.87	-0.2
3,959,164	-		Psyr_3307	0.88	-1.1
3,959,172	-		Psyr_3307	0.88	-1.3
3,959,214	+				-2.1
3,959,215	-				-0.6
3,959,215	-				-2.7
3,959,268	+				+0.6
3,959,268	+				+1.4
3,959,268	+				-2.4
3,959,268	+				+0.8
3,959,268	+				-1.2
3,959,269	-				-0.1
3,959,269	-				-0.0
3,959,269	-				-0.8
3,959,269	-				-1.3
3,959,269	-				+0.2
3,959,311	+				+1.1
3,959,312	-				+0.7
3,959,313	+				+0.7
3,959,313	+				+0.6
3,959,313	+				-0.7
3,959,313	+				+2.4
3,959,314	-				-0.6
3,959,576	+		Psyr_3308	0.25	+0.2
3,959,577	-		Psyr_3308	0.25	-0.0
3,959,577	-		Psyr_3308	0.25	-1.1
3,959,577	-		Psyr_3308	0.25	-0.1
3,959,577	-		Psyr_3308	0.25	-0.2
3,959,577	-		Psyr_3308	0.25	-1.2
3,959,587	+		Psyr_3308	0.26	-0.0
3,959,628	+		Psyr_3308	0.29	+1.2
3,959,628	+		Psyr_3308	0.29	-1.6
3,959,628	+		Psyr_3308	0.29	-0.3
3,959,628	+		Psyr_3308	0.29	+0.6
3,959,628	+		Psyr_3308	0.29	-0.1
3,959,628	+		Psyr_3308	0.29	-0.7
3,959,628	+		Psyr_3308	0.29	-0.6
3,959,628	+		Psyr_3308	0.29	-2.3
3,959,628	+		Psyr_3308	0.29	+1.3
3,959,628	+		Psyr_3308	0.29	-0.8
3,959,628	+		Psyr_3308	0.29	-0.2
3,959,629	-		Psyr_3308	0.29	-0.5
3,959,629	-		Psyr_3308	0.29	+2.1
3,959,629	-		Psyr_3308	0.29	-0.4
3,959,629	-		Psyr_3308	0.29	-3.5
3,959,629	-		Psyr_3308	0.29	-1.3
3,959,629	-		Psyr_3308	0.29	-1.3
3,959,629	-		Psyr_3308	0.29	-0.2
3,959,629	-		Psyr_3308	0.29	-0.6
3,959,629	-		Psyr_3308	0.29	+1.4
3,959,633	+		Psyr_3308	0.30	+0.8
3,959,634	-		Psyr_3308	0.30	-1.9
3,959,637	+		Psyr_3308	0.30	-0.4
3,959,637	+		Psyr_3308	0.30	-0.2
3,959,637	+		Psyr_3308	0.30	-2.1
3,959,637	+		Psyr_3308	0.30	-1.1
3,959,638	-		Psyr_3308	0.30	+1.5
3,959,638	-		Psyr_3308	0.30	-3.5
3,959,638	-		Psyr_3308	0.30	-0.3
3,959,724	-		Psyr_3308	0.38	-0.6
3,959,803	+		Psyr_3308	0.45	+0.6
3,959,803	+		Psyr_3308	0.45	+1.4
3,959,803	+		Psyr_3308	0.45	+0.4
3,959,803	+		Psyr_3308	0.45	+0.1
3,959,804	-		Psyr_3308	0.45	-0.6
3,959,804	-		Psyr_3308	0.45	-0.8
3,959,804	-		Psyr_3308	0.45	-0.9
3,959,804	-		Psyr_3308	0.45	-0.4
3,959,804	-		Psyr_3308	0.45	-0.4
3,959,838	+		Psyr_3308	0.48	-0.2
3,960,010	-		Psyr_3308	0.64	-0.4
3,960,054	+		Psyr_3308	0.68	+0.2