Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3275

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
3,922,038	+		Psyr_3274	0.68	+2.9
3,922,038	+		Psyr_3274	0.68	-0.8
3,922,039	-		Psyr_3274	0.68	-1.3
3,922,039	-		Psyr_3274	0.68	-0.6
3,922,039	-		Psyr_3274	0.68	-1.5
3,922,039	-		Psyr_3274	0.68	+0.2
3,922,120	+		Psyr_3274	0.73	+0.2
3,922,162	+		Psyr_3274	0.75	-0.4
3,922,304	-		Psyr_3274	0.82	-0.4
3,922,304	-		Psyr_3274	0.82	-0.1
3,922,436	+		Psyr_3274	0.89	+1.1
3,922,436	+		Psyr_3274	0.89	-2.0
3,922,437	-		Psyr_3274	0.89	+1.4
3,922,437	-		Psyr_3274	0.89	-1.3
3,922,697	-				+0.0
3,922,721	+				-1.3
3,922,722	-				+1.4
3,922,830	+				-0.5
3,922,830	+				-1.6
3,922,830	+				-0.9
3,922,830	+				+1.4
3,922,830	+				-0.6
3,922,830	+				+0.9
3,922,830	+				+1.2
3,922,830	+				-0.5
3,922,831	-				+0.2
3,922,831	-				+1.0
3,922,831	-				-0.2
3,922,831	-				+0.5
3,922,831	-				-1.4
3,922,831	-				-2.0
3,922,932	+				+2.4
3,923,065	+		Psyr_3275	0.10	-1.1
3,923,065	+		Psyr_3275	0.10	+1.1
3,923,065	+		Psyr_3275	0.10	+0.6
3,923,065	+		Psyr_3275	0.10	-0.6
3,923,065	+		Psyr_3275	0.10	-0.2
3,923,065	+		Psyr_3275	0.10	+0.4
3,923,065	+		Psyr_3275	0.10	-0.7
3,923,065	+		Psyr_3275	0.10	+0.4
3,923,065	+		Psyr_3275	0.10	+1.4
3,923,065	+		Psyr_3275	0.10	+1.4
3,923,065	+		Psyr_3275	0.10	-0.6
3,923,065	+		Psyr_3275	0.10	-2.4
3,923,066	-				+1.4
3,923,066	-		Psyr_3275	0.10	-1.2
3,923,066	-		Psyr_3275	0.10	-0.8
3,923,066	-		Psyr_3275	0.10	-1.8
3,923,066	-		Psyr_3275	0.10	+0.9
3,923,066	-		Psyr_3275	0.10	-1.8
3,923,067	+		Psyr_3275	0.10	-0.7
3,923,067	+		Psyr_3275	0.10	+1.4
3,923,067	+		Psyr_3275	0.10	-0.0
3,923,068	-		Psyr_3275	0.10	-0.8
3,923,068	-		Psyr_3275	0.10	-0.8
3,923,068	-		Psyr_3275	0.10	-0.6
3,923,068	-		Psyr_3275	0.10	-1.4
3,923,068	-		Psyr_3275	0.10	-1.8
3,923,215	+		Psyr_3275	0.27	-0.8
3,923,216	-		Psyr_3275	0.28	-0.2
3,923,216	-		Psyr_3275	0.28	-1.2
3,923,218	-		Psyr_3275	0.28	+0.4
3,923,245	+				+0.6
3,923,245	+		Psyr_3275	0.31	+0.4
3,923,277	+		Psyr_3275	0.35	+1.8
3,923,419	+		Psyr_3275	0.51	-1.2
3,923,419	+		Psyr_3275	0.51	-1.2
3,923,419	+				-0.8
3,923,419	+		Psyr_3275	0.51	+2.1
3,923,419	+		Psyr_3275	0.51	+0.1
3,923,419	+		Psyr_3275	0.51	-1.2
3,923,419	+		Psyr_3275	0.51	+2.0
3,923,419	+		Psyr_3275	0.51	+0.9
3,923,419	+		Psyr_3275	0.51	+0.2
3,923,419	+		Psyr_3275	0.51	+0.1
3,923,419	+		Psyr_3275	0.51	+0.1
3,923,419	+		Psyr_3275	0.51	+0.2
3,923,419	+		Psyr_3275	0.51	+0.7
3,923,420	-		Psyr_3275	0.51	-0.6
3,923,420	-		Psyr_3275	0.51	-2.2
3,923,420	-		Psyr_3275	0.51	-1.9
3,923,420	-		Psyr_3275	0.51	-0.4
3,923,420	-		Psyr_3275	0.51	-0.2
3,923,420	-		Psyr_3275	0.51	+1.1
3,923,420	-		Psyr_3275	0.51	-0.2
3,923,420	-		Psyr_3275	0.51	+1.0
3,923,420	-		Psyr_3275	0.51	-0.9
3,923,420	-		Psyr_3275	0.51	+0.4
3,923,420	-		Psyr_3275	0.51	-0.0
3,923,420	-		Psyr_3275	0.51	+0.4
3,923,420	-		Psyr_3275	0.51	+0.5
3,923,420	-		Psyr_3275	0.51	+1.1
3,923,459	-		Psyr_3275	0.56	-1.0
3,923,459	-		Psyr_3275	0.56	-0.8
3,923,813	+				+0.7
3,923,813	+				-0.6
3,923,929	+				+1.1
3,923,929	+				+0.3
3,923,930	-				+0.5
3,923,930	-				-0.4
3,923,930	-				+0.4
3,923,930	-				-0.5
3,923,965	+		Psyr_3276	0.11	-0.3
3,923,965	+		Psyr_3276	0.11	+1.6
3,923,966	-		Psyr_3276	0.11	+1.4
3,924,071	+		Psyr_3276	0.22	+0.2
3,924,072	-		Psyr_3276	0.22	+0.6
3,924,072	-		Psyr_3276	0.22	-0.2
3,924,155	-		Psyr_3276	0.30	-1.1
3,924,292	+		Psyr_3276	0.44	-1.6
3,924,293	-		Psyr_3276	0.44	+0.4
3,924,410	+		Psyr_3276	0.56	+1.9
3,924,410	+		Psyr_3276	0.56	+1.4
3,924,410	+		Psyr_3276	0.56	-1.8
3,924,410	+		Psyr_3276	0.56	+0.9
3,924,412	+		Psyr_3276	0.56	+0.0
3,924,412	+		Psyr_3276	0.56	-0.1
3,924,412	+		Psyr_3276	0.56	-0.9
3,924,412	+		Psyr_3276	0.56	-1.5
3,924,413	-		Psyr_3276	0.56	-0.6
3,924,413	-		Psyr_3276	0.56	-1.2
3,924,413	-		Psyr_3276	0.56	+0.7
3,924,413	-		Psyr_3276	0.56	-0.6
3,924,487	+		Psyr_3276	0.63	+0.0
3,924,487	+		Psyr_3276	0.63	+1.5
3,924,601	+		Psyr_3276	0.75	+2.4
3,924,602	-		Psyr_3276	0.75	-1.8
3,924,602	-		Psyr_3276	0.75	+0.4
3,924,602	-		Psyr_3276	0.75	-0.0
3,924,631	+		Psyr_3276	0.78	-0.5
3,924,631	+		Psyr_3276	0.78	+0.9
3,924,632	-		Psyr_3276	0.78	+1.1
3,924,632	-		Psyr_3276	0.78	-0.2
3,924,641	-		Psyr_3276	0.79	+0.6
3,924,688	+		Psyr_3276	0.84	-0.8
3,924,688	+		Psyr_3276	0.84	+0.2
3,924,689	-		Psyr_3276	0.84	-0.2
3,924,689	-		Psyr_3276	0.84	+1.0
3,924,740	+		Psyr_3276	0.89	-1.8
3,924,741	-		Psyr_3276	0.89	-1.0