Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3234

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
3,872,625	-				-1.9
3,872,860	+				+0.8
3,872,860	+				+2.0
3,872,860	+				-0.6
3,872,860	+				-0.6
3,872,860	+				-0.5
3,872,860	+				+0.2
3,872,861	-				-0.2
3,872,861	-				+1.2
3,872,861	-				-1.2
3,872,861	-				+0.7
3,872,861	-				-0.2
3,872,861	-				-2.6
3,872,878	+				-1.2
3,872,878	+				+0.4
3,872,878	+				+1.4
3,872,878	+				-0.5
3,872,879	-				-0.2
3,872,879	-				-0.4
3,872,879	-				+1.1
3,872,879	-				-1.1
3,872,879	-				+0.8
3,872,958	+				+1.0
3,872,959	-				+0.3
3,873,004	+		Psyr_3233	0.17	+0.1
3,873,131	+		Psyr_3233	0.39	-0.2
3,873,131	+		Psyr_3233	0.39	+0.2
3,873,131	+		Psyr_3233	0.39	+0.2
3,873,132	-		Psyr_3233	0.39	+2.8
3,873,132	-		Psyr_3233	0.39	-0.3
3,873,354	+		Psyr_3233	0.77	+1.2
3,873,483	-				+0.5
3,873,483	-				-0.6
3,873,570	-		Psyr_3234	0.11	+0.5
3,873,570	-		Psyr_3234	0.11	+0.3
3,873,573	+		Psyr_3234	0.11	+1.8
3,873,685	+		Psyr_3234	0.30	+0.1
3,873,686	-		Psyr_3234	0.30	-1.2
3,873,691	+		Psyr_3234	0.31	-0.5
3,873,692	-		Psyr_3234	0.31	-1.7
3,873,710	-		Psyr_3234	0.34	+0.3
3,873,710	-		Psyr_3234	0.34	+0.1
3,873,710	-		Psyr_3234	0.34	-0.6
3,873,710	-		Psyr_3234	0.34	+0.1
3,873,853	+		Psyr_3234	0.57	+1.0
3,873,862	+		Psyr_3234	0.59	+0.6
3,873,863	-		Psyr_3234	0.59	-0.2
3,873,877	+		Psyr_3234	0.61	-0.7
3,873,891	-		Psyr_3234	0.64	+0.7
3,873,892	+		Psyr_3234	0.64	+2.7
3,873,892	+		Psyr_3234	0.64	+0.4
3,873,892	+		Psyr_3234	0.64	-0.3
3,873,893	-		Psyr_3234	0.64	-0.6
3,874,052	+				-2.7
3,874,052	+				+2.0
3,874,140	+				-0.5
3,874,140	+				+0.4
3,874,141	-				-1.8
3,874,239	-				-0.4
3,874,356	-		Psyr_3235	0.42	-0.3
3,874,509	+				+1.4
3,874,509	+				+0.1
3,874,510	-				-0.4
3,874,510	-				-0.6
3,874,510	-				-0.5
3,874,510	-				-0.1
3,874,510	-				-0.4
3,874,898	+		Psyr_3236	0.33	+0.1
3,874,898	+		Psyr_3236	0.33	-1.3
3,874,899	-		Psyr_3236	0.33	-0.8
3,875,016	+		Psyr_3236	0.46	-0.2
3,875,016	+		Psyr_3236	0.46	+4.2
3,875,016	+		Psyr_3236	0.46	+0.9
3,875,016	+		Psyr_3236	0.46	+0.2
3,875,016	+		Psyr_3236	0.46	+0.4
3,875,017	-		Psyr_3236	0.46	+0.3
3,875,017	-		Psyr_3236	0.46	+0.3
3,875,017	-		Psyr_3236	0.46	-0.3
3,875,017	-		Psyr_3236	0.46	-1.7
3,875,017	-		Psyr_3236	0.46	+1.2