Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3209

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3208 and Psyr_3209 are separated by 7 nucleotidesPsyr_3209 and Psyr_3210 are separated by 106 nucleotides Psyr_3208: Psyr_3208 - NADH dehydrogenase subunit M, at 3,839,648 to 3,841,180 _3208 Psyr_3209: Psyr_3209 - NADH dehydrogenase subunit N, at 3,841,188 to 3,842,657 _3209 Psyr_3210: Psyr_3210 - Protein of unknown function UPF0118, at 3,842,764 to 3,843,828 _3210 Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -2 -1 0 1 2at 3840.315 kb on - strand, within Psyr_3208at 3840.741 kb on - strand, within Psyr_3208at 3840.800 kb on + strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.801 kb on - strand, within Psyr_3208at 3840.983 kb on + strand, within Psyr_3208at 3841.413 kb on + strand, within Psyr_3209at 3841.471 kb on + strand, within Psyr_3209at 3842.491 kb on - strand, within Psyr_3209at 3842.896 kb on - strand, within Psyr_3210at 3842.896 kb on - strand, within Psyr_3210at 3842.896 kb on - strand, within Psyr_3210at 3842.906 kb on + strand, within Psyr_3210at 3842.995 kb on + strand, within Psyr_3210at 3842.995 kb on + strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.032 kb on + strand, within Psyr_3210at 3843.033 kb on - strand, within Psyr_3210at 3843.206 kb on - strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.311 kb on + strand, within Psyr_3210at 3843.312 kb on - strand, within Psyr_3210at 3843.320 kb on + strand, within Psyr_3210at 3843.320 kb on + strand, within Psyr_3210at 3843.321 kb on - strand, within Psyr_3210at 3843.392 kb on + strand, within Psyr_3210at 3843.554 kb on + strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210at 3843.555 kb on - strand, within Psyr_3210

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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3,840,315 - Psyr_3208 0.44 -2.2
3,840,741 - Psyr_3208 0.71 -2.5
3,840,800 + Psyr_3208 0.75 -2.2
3,840,801 - Psyr_3208 0.75 -1.2
3,840,801 - Psyr_3208 0.75 -0.4
3,840,801 - Psyr_3208 0.75 +0.5
3,840,983 + Psyr_3208 0.87 -1.5
3,841,413 + Psyr_3209 0.15 +0.6
3,841,471 + Psyr_3209 0.19 -0.2
3,842,491 - Psyr_3209 0.89 -1.2
3,842,896 - Psyr_3210 0.12 -0.6
3,842,896 - Psyr_3210 0.12 -1.0
3,842,896 - Psyr_3210 0.12 +0.4
3,842,906 + Psyr_3210 0.13 +1.0
3,842,995 + Psyr_3210 0.22 -0.6
3,842,995 + Psyr_3210 0.22 +1.7
3,843,032 + Psyr_3210 0.25 -2.2
3,843,032 + Psyr_3210 0.25 -0.2
3,843,033 - Psyr_3210 0.25 +0.4
3,843,206 - Psyr_3210 0.42 +0.4
3,843,311 + Psyr_3210 0.51 +0.2
3,843,311 + Psyr_3210 0.51 +0.9
3,843,311 + Psyr_3210 0.51 +2.0
3,843,312 - Psyr_3210 0.51 +0.1
3,843,320 + Psyr_3210 0.52 +1.6
3,843,320 + Psyr_3210 0.52 -0.6
3,843,321 - Psyr_3210 0.52 +0.1
3,843,392 + Psyr_3210 0.59 -0.4
3,843,554 + Psyr_3210 0.74 +1.0
3,843,555 - Psyr_3210 0.74 -0.0
3,843,555 - Psyr_3210 0.74 +0.6
3,843,555 - Psyr_3210 0.74 -0.5

Or see this region's nucleotide sequence