Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2979

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
3,571,108	+		Psyr_2978	0.38	+1.8
3,571,108	+		Psyr_2978	0.38	+0.7
3,571,109	-		Psyr_2978	0.38	-0.4
3,571,109	-		Psyr_2978	0.38	-0.7
3,571,109	-		Psyr_2978	0.38	-2.6
3,571,279	+		Psyr_2978	0.51	+0.7
3,571,280	-		Psyr_2978	0.51	-0.3
3,571,280	-		Psyr_2978	0.51	-1.4
3,571,280	-		Psyr_2978	0.51	-1.3
3,571,280	-		Psyr_2978	0.51	+2.1
3,571,280	-		Psyr_2978	0.51	+0.5
3,571,423	-		Psyr_2978	0.63	-0.1
3,571,608	+		Psyr_2978	0.77	+0.5
3,571,608	+		Psyr_2978	0.77	+0.5
3,571,609	-		Psyr_2978	0.77	-0.7
3,571,609	-		Psyr_2978	0.77	+0.1
3,571,640	+		Psyr_2978	0.80	+0.2
3,571,733	+		Psyr_2978	0.87	-0.7
3,571,734	-		Psyr_2978	0.87	+3.5
3,571,734	-		Psyr_2978	0.87	-3.1
3,571,739	+		Psyr_2978	0.87	-0.4
3,571,739	+		Psyr_2978	0.87	-0.9
3,571,740	-		Psyr_2978	0.87	-0.6
3,571,740	-		Psyr_2978	0.87	-0.7
3,571,740	-		Psyr_2978	0.87	+0.5
3,571,754	+		Psyr_2978	0.89	-0.7
3,571,856	+				+1.5
3,571,856	+				-0.5
3,571,857	-				-0.9
3,571,857	-				-0.5
3,571,857	-				-0.7
3,571,857	-				-1.4
3,571,857	-				+1.1
3,571,857	-				-1.7
3,571,920	+				+1.3
3,571,921	-				+0.7
3,571,921	-				-0.9
3,571,993	+				-1.7
3,572,057	+				+0.0
3,572,067	+				-1.4
3,572,067	+				-2.5
3,572,142	-		Psyr_2979	0.11	-0.8
3,572,142	-		Psyr_2979	0.11	+0.3
3,572,303	+		Psyr_2979	0.23	-1.5
3,572,347	+		Psyr_2979	0.26	-0.4
3,572,347	+		Psyr_2979	0.26	-2.0
3,572,348	-		Psyr_2979	0.26	+1.0
3,572,348	-		Psyr_2979	0.26	+0.0
3,572,348	-		Psyr_2979	0.26	-0.7
3,572,352	+		Psyr_2979	0.26	-0.4
3,572,482	+		Psyr_2979	0.36	+0.1
3,572,483	-		Psyr_2979	0.36	-0.0
3,572,503	+		Psyr_2979	0.38	+0.0
3,572,504	-		Psyr_2979	0.38	+2.5
3,572,578	+		Psyr_2979	0.43	-0.0
3,572,825	-		Psyr_2979	0.61	-1.1
3,572,869	+		Psyr_2979	0.65	+1.5
3,572,965	+		Psyr_2979	0.72	-1.2
3,572,965	+		Psyr_2979	0.72	+1.2
3,572,965	+		Psyr_2979	0.72	-1.2
3,572,965	+		Psyr_2979	0.72	-1.6
3,572,965	+		Psyr_2979	0.72	-0.8
3,572,966	-		Psyr_2979	0.72	-2.4
3,572,966	-		Psyr_2979	0.72	-0.7
3,573,042	+		Psyr_2979	0.77	-0.9
3,573,043	-		Psyr_2979	0.77	-0.3
3,573,058	+		Psyr_2979	0.78	-1.0
3,573,237	+				-0.4
3,573,237	+				+0.4
3,573,238	-				-0.4
3,573,238	-				-0.6
3,573,238	-				-1.1
3,573,238	-				-0.4
3,573,238	-				-0.1
3,573,324	+				-0.9
3,573,325	-				+0.3
3,573,354	+				-0.6
3,573,355	-				+0.1
3,573,371	+				+0.3
3,573,372	-				-0.5
3,573,372	-				+0.9
3,573,450	+				-0.1
3,573,451	-				+1.6
3,573,474	+				-1.3
3,573,475	-				+0.5
3,573,475	-				-0.0
3,573,475	-				-1.7
3,573,555	+		Psyr_2980	0.12	-1.1
3,573,555	+		Psyr_2980	0.12	-0.9
3,573,556	-		Psyr_2980	0.12	-2.4
3,573,556	-		Psyr_2980	0.12	-0.8
3,573,783	+		Psyr_2980	0.39	-2.9
3,573,783	+		Psyr_2980	0.39	-0.9
3,573,783	+		Psyr_2980	0.39	-0.9
3,573,784	-		Psyr_2980	0.40	-0.9
3,573,784	-		Psyr_2980	0.40	-0.5
3,573,784	-		Psyr_2980	0.40	-1.9
3,574,084	-		Psyr_2980	0.75	-1.9
3,574,180	-		Psyr_2980	0.87	-1.4
3,574,333	+				-1.4
3,574,333	+				-0.5
3,574,334	-				-0.4