Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2904

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2903 and Psyr_2904 overlap by 4 nucleotidesPsyr_2904 and Psyr_2905 are separated by 1 nucleotides Psyr_2903: Psyr_2903 - Binding-protein-dependent transport systems inner membrane component, at 3,482,113 to 3,483,177 _2903 Psyr_2904: Psyr_2904 - Binding-protein-dependent transport systems inner membrane component, at 3,483,174 to 3,484,199 _2904 Psyr_2905: Psyr_2905 - ABC transporter, at 3,484,201 to 3,485,778 _2905 Position (kb) 3483 3484 3485Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3482.404 kb on + strand, within Psyr_2903at 3482.404 kb on + strand, within Psyr_2903at 3482.405 kb on - strand, within Psyr_2903at 3482.405 kb on - strand, within Psyr_2903at 3482.518 kb on + strand, within Psyr_2903at 3482.518 kb on + strand, within Psyr_2903at 3482.518 kb on + strand, within Psyr_2903at 3482.519 kb on - strand, within Psyr_2903at 3482.746 kb on + strand, within Psyr_2903at 3482.747 kb on - strand, within Psyr_2903at 3482.852 kb on - strand, within Psyr_2903at 3482.900 kb on - strand, within Psyr_2903at 3483.031 kb on + strand, within Psyr_2903at 3483.031 kb on + strandat 3483.031 kb on + strand, within Psyr_2903at 3483.031 kb on + strand, within Psyr_2903at 3483.032 kb on - strand, within Psyr_2903at 3483.108 kb on - strandat 3483.130 kb on + strandat 3483.130 kb on + strandat 3483.342 kb on + strand, within Psyr_2904at 3483.342 kb on + strand, within Psyr_2904at 3483.343 kb on - strand, within Psyr_2904at 3483.364 kb on - strand, within Psyr_2904at 3483.365 kb on + strand, within Psyr_2904at 3483.366 kb on - strand, within Psyr_2904at 3483.429 kb on - strand, within Psyr_2904at 3483.429 kb on - strand, within Psyr_2904at 3483.470 kb on + strand, within Psyr_2904at 3483.498 kb on + strand, within Psyr_2904at 3483.498 kb on + strand, within Psyr_2904at 3483.499 kb on - strand, within Psyr_2904at 3483.499 kb on - strand, within Psyr_2904at 3483.499 kb on - strand, within Psyr_2904at 3483.499 kb on - strand, within Psyr_2904at 3483.678 kb on + strand, within Psyr_2904at 3483.678 kb on + strand, within Psyr_2904at 3483.679 kb on - strand, within Psyr_2904at 3483.681 kb on + strand, within Psyr_2904at 3483.747 kb on + strand, within Psyr_2904at 3483.748 kb on - strand, within Psyr_2904at 3483.748 kb on - strand, within Psyr_2904at 3483.969 kb on + strand, within Psyr_2904at 3483.970 kb on - strand, within Psyr_2904at 3484.153 kb on + strandat 3484.154 kb on - strandat 3484.154 kb on - strandat 3484.518 kb on - strand, within Psyr_2905at 3484.757 kb on + strand, within Psyr_2905at 3484.757 kb on + strand, within Psyr_2905at 3484.758 kb on - strand, within Psyr_2905at 3485.074 kb on + strand, within Psyr_2905at 3485.074 kb on + strand, within Psyr_2905at 3485.075 kb on - strand, within Psyr_2905

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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3,482,404 + Psyr_2903 0.27 +1.2
3,482,404 + Psyr_2903 0.27 -0.3
3,482,405 - Psyr_2903 0.27 +0.3
3,482,405 - Psyr_2903 0.27 +0.8
3,482,518 + Psyr_2903 0.38 -0.8
3,482,518 + Psyr_2903 0.38 -0.1
3,482,518 + Psyr_2903 0.38 +0.1
3,482,519 - Psyr_2903 0.38 -1.0
3,482,746 + Psyr_2903 0.59 +1.2
3,482,747 - Psyr_2903 0.60 -0.8
3,482,852 - Psyr_2903 0.69 +0.7
3,482,900 - Psyr_2903 0.74 -0.3
3,483,031 + Psyr_2903 0.86 +1.5
3,483,031 + +2.5
3,483,031 + Psyr_2903 0.86 +0.6
3,483,031 + Psyr_2903 0.86 -0.2
3,483,032 - Psyr_2903 0.86 -1.2
3,483,108 - -0.3
3,483,130 + +1.8
3,483,130 + -0.4
3,483,342 + Psyr_2904 0.16 +0.5
3,483,342 + Psyr_2904 0.16 -1.5
3,483,343 - Psyr_2904 0.16 -0.4
3,483,364 - Psyr_2904 0.19 +0.2
3,483,365 + Psyr_2904 0.19 -0.6
3,483,366 - Psyr_2904 0.19 +1.5
3,483,429 - Psyr_2904 0.25 -1.8
3,483,429 - Psyr_2904 0.25 +0.4
3,483,470 + Psyr_2904 0.29 +0.8
3,483,498 + Psyr_2904 0.32 -0.0
3,483,498 + Psyr_2904 0.32 +0.4
3,483,499 - Psyr_2904 0.32 +1.3
3,483,499 - Psyr_2904 0.32 +5.1
3,483,499 - Psyr_2904 0.32 -1.4
3,483,499 - Psyr_2904 0.32 +0.2
3,483,678 + Psyr_2904 0.49 +0.5
3,483,678 + Psyr_2904 0.49 +0.2
3,483,679 - Psyr_2904 0.49 -0.8
3,483,681 + Psyr_2904 0.49 +0.5
3,483,747 + Psyr_2904 0.56 -2.5
3,483,748 - Psyr_2904 0.56 +0.3
3,483,748 - Psyr_2904 0.56 -0.6
3,483,969 + Psyr_2904 0.77 +0.6
3,483,970 - Psyr_2904 0.78 -1.0
3,484,153 + -0.5
3,484,154 - -1.3
3,484,154 - +0.3
3,484,518 - Psyr_2905 0.20 +3.5
3,484,757 + Psyr_2905 0.35 +0.1
3,484,757 + Psyr_2905 0.35 -0.1
3,484,758 - Psyr_2905 0.35 -1.0
3,485,074 + Psyr_2905 0.55 -0.1
3,485,074 + Psyr_2905 0.55 -1.4
3,485,075 - Psyr_2905 0.55 +0.1

Or see this region's nucleotide sequence