Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2851

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
3,423,114	+				+0.4
3,423,146	+				+3.1
3,423,146	+				-0.6
3,423,184	+				+1.5
3,423,184	+				+2.5
3,423,184	+				+1.5
3,423,184	+				+0.5
3,423,184	+				-0.5
3,423,184	+				-0.2
3,423,184	+				+1.1
3,423,185	-				-0.4
3,423,185	-				+0.7
3,423,185	-				+0.2
3,423,185	-				+2.0
3,423,185	-				+0.4
3,423,185	-				-0.8
3,423,189	-				+1.4
3,423,189	-				+1.1
3,423,236	-		Psyr_2850	0.19	+0.4
3,423,337	-		Psyr_2850	0.47	-2.0
3,423,337	-		Psyr_2850	0.47	+1.9
3,423,337	-		Psyr_2850	0.47	+1.9
3,423,360	+		Psyr_2850	0.53	+0.5
3,423,360	+		Psyr_2850	0.53	+0.7
3,423,360	+		Psyr_2850	0.53	-0.6
3,423,360	+		Psyr_2850	0.53	+1.1
3,423,361	-		Psyr_2850	0.54	-0.7
3,423,361	-		Psyr_2850	0.54	+0.5
3,423,492	+				-0.1
3,423,594	+				+0.4
3,423,607	+				-0.9
3,423,826	-		Psyr_2851	0.61	+1.5
3,423,845	-		Psyr_2851	0.67	+0.9
3,423,873	+		Psyr_2851	0.75	-0.6
3,423,874	-		Psyr_2851	0.75	+0.2
3,423,993	+				+0.9
3,423,993	+				-2.9
3,424,083	-				-1.3
3,424,083	-				-1.1
3,424,083	-				+0.8
3,424,129	+				+0.5
3,424,130	-				+0.4
3,424,130	-				+0.9
3,424,130	-				-1.5
3,424,130	-				-1.9
3,424,130	-				+2.5
3,424,155	+				-0.5
3,424,156	-				+1.5
3,424,156	-				-0.4
3,424,192	+				+0.4
3,424,193	-				-1.9
3,424,193	-				+0.1
3,424,253	+				-0.1
3,424,268	+				-0.4
3,424,268	+				-0.5
3,424,268	+				-0.0
3,424,269	-				+0.4
3,424,269	-				-0.2
3,424,269	-				+1.7
3,424,276	-				-0.9
3,424,396	+				-1.6
3,424,397	-		Psyr_2852	0.25	+1.0
3,424,397	-		Psyr_2852	0.25	-0.1
3,424,397	-		Psyr_2852	0.25	-0.6
3,424,477	+		Psyr_2852	0.40	-0.4
3,424,477	+		Psyr_2852	0.40	+0.1
3,424,478	-		Psyr_2852	0.41	+1.3
3,424,478	-		Psyr_2852	0.41	+1.2
3,424,478	-		Psyr_2852	0.41	-1.1
3,424,478	-		Psyr_2852	0.41	-1.2
3,424,533	+		Psyr_2852	0.51	+1.1
3,424,559	+		Psyr_2852	0.56	+1.5
3,424,613	-		Psyr_2852	0.66	-2.4
3,424,774	+				-0.3
3,424,774	+				-0.8
3,424,860	+				+1.5
3,424,860	+				+0.4
3,424,861	-				+0.7
3,424,861	-				+1.8
3,424,861	-				-0.4
3,424,916	-				+0.7
3,424,916	-				-1.2
3,424,943	+				-1.6
3,424,943	+				-1.0
3,424,944	-				-1.6