Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2445

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,829,381	-		Psyr_2443	0.88	-0.6
2,829,381	-		Psyr_2443	0.88	-2.5
2,829,526	+				-0.0
2,829,526	+				-0.6
2,829,526	+				-2.1
2,829,527	-				-1.6
2,829,527	-				+0.6
2,829,527	-				+0.4
2,829,527	-				-1.2
2,829,563	+				+3.2
2,829,564	-				+1.8
2,829,564	-				+0.6
2,829,567	+				-1.0
2,829,568	-				-0.7
2,829,581	+				-0.2
2,829,582	-				-0.7
2,829,582	-				-0.4
2,829,888	-		Psyr_2444	0.69	-0.6
2,829,888	-		Psyr_2444	0.69	-1.0
2,829,913	+		Psyr_2444	0.76	-1.2
2,829,914	-		Psyr_2444	0.76	-0.8
2,830,127	+				-0.8
2,830,128	-				-0.4
2,830,165	+				+0.2
2,830,165	+				-1.2
2,830,165	+				-2.1
2,830,170	+				-0.4
2,830,236	+				+0.1
2,830,236	+				-0.6
2,830,236	+				-0.6
2,830,237	-				-0.2
2,830,237	-				-1.8
2,830,237	-				-1.4
2,830,270	-				-0.6
2,830,270	-				+0.6
2,830,328	+				-0.0
2,830,387	+				+0.7
2,830,387	+				-1.9
2,830,416	+				-1.8
2,830,417	-				-0.6
2,830,451	+				+0.4
2,830,451	+				-0.2
2,830,451	+				+1.0
2,830,451	+				+2.2
2,830,452	-				+0.7
2,830,452	-				-0.1
2,830,452	-				+0.6
2,830,467	+				+2.9
2,830,467	+				-1.4
2,830,648	-				-0.0
2,830,648	-				+0.6
2,830,732	+		Psyr_2445	0.11	+0.6
2,830,732	+		Psyr_2445	0.11	-0.5
2,830,732	+		Psyr_2445	0.11	-0.7
2,830,733	-		Psyr_2445	0.11	+0.6
2,830,757	+		Psyr_2445	0.12	-1.0
2,830,818	-		Psyr_2445	0.14	-1.8
2,830,904	+		Psyr_2445	0.16	+0.1
2,830,905	-		Psyr_2445	0.16	+1.6
2,830,943	+		Psyr_2445	0.17	-1.1
2,830,943	+		Psyr_2445	0.17	+0.4
2,830,944	-		Psyr_2445	0.17	-0.4
2,830,945	+		Psyr_2445	0.17	-0.3
2,830,978	+		Psyr_2445	0.18	+0.4
2,830,982	+		Psyr_2445	0.18	+2.6
2,830,983	-		Psyr_2445	0.18	-0.8
2,831,135	+		Psyr_2445	0.23	+0.6
2,831,135	+		Psyr_2445	0.23	-0.7
2,831,321	+		Psyr_2445	0.28	-0.3
2,831,321	+		Psyr_2445	0.28	+0.2
2,831,321	+		Psyr_2445	0.28	+0.2
2,831,322	-		Psyr_2445	0.28	+0.2
2,831,322	-		Psyr_2445	0.28	+2.0
2,831,322	-		Psyr_2445	0.28	+1.6
2,831,810	+		Psyr_2445	0.42	+1.0
2,831,811	-		Psyr_2445	0.42	+0.9
2,831,811	-		Psyr_2445	0.42	+1.6
2,831,811	-		Psyr_2445	0.42	-1.4
2,831,811	-		Psyr_2445	0.42	+0.4
2,831,833	+		Psyr_2445	0.43	+1.3
2,831,833	+		Psyr_2445	0.43	-0.8
2,831,833	+		Psyr_2445	0.43	+0.8
2,831,833	+		Psyr_2445	0.43	+1.9
2,831,834	-		Psyr_2445	0.43	+0.4
2,831,834	-		Psyr_2445	0.43	-0.3
2,831,834	-		Psyr_2445	0.43	+0.8
2,831,948	+		Psyr_2445	0.46	-0.8
2,831,949	-		Psyr_2445	0.46	+1.6
2,831,949	-		Psyr_2445	0.46	-0.2
2,831,949	-		Psyr_2445	0.46	+3.6
2,832,322	+		Psyr_2445	0.56	+1.6
2,832,323	-		Psyr_2445	0.57	+1.3
2,832,369	-		Psyr_2445	0.58	+0.4
2,832,464	-		Psyr_2445	0.61	+0.2
2,832,491	+		Psyr_2445	0.61	-0.6
2,832,491	+		Psyr_2445	0.61	-0.3
2,832,491	+		Psyr_2445	0.61	-0.1
2,832,491	+		Psyr_2445	0.61	-0.3
2,832,491	+		Psyr_2445	0.61	-0.5
2,832,491	+		Psyr_2445	0.61	+0.1
2,832,491	+		Psyr_2445	0.61	+0.6
2,832,492	-		Psyr_2445	0.61	-0.4
2,832,492	-		Psyr_2445	0.61	+1.1
2,832,555	+		Psyr_2445	0.63	+0.3
2,832,564	-		Psyr_2445	0.63	+1.1
2,832,719	+		Psyr_2445	0.68	+1.6
2,832,719	+		Psyr_2445	0.68	+0.4
2,832,800	-		Psyr_2445	0.70	+1.3
2,832,800	-		Psyr_2445	0.70	+0.6
2,833,043	-		Psyr_2445	0.77	-0.6
2,833,169	+		Psyr_2445	0.81	-0.7
2,833,169	+		Psyr_2445	0.81	+0.3
2,833,170	-		Psyr_2445	0.81	-2.1
2,833,275	-		Psyr_2445	0.84	-0.1
2,833,322	+		Psyr_2445	0.85	-2.4
2,833,323	-		Psyr_2445	0.85	+0.6
2,833,510	+				+0.1
2,833,511	-				-0.2
2,833,602	+				+1.0
2,833,603	-				+1.3
2,833,603	-				+2.2
2,833,603	-				-0.4
2,833,603	-				-0.3
2,833,775	+				+1.8
2,833,846	+				-0.3
2,833,867	+				+0.7
2,833,868	-				+0.3
2,833,868	-				-1.8
2,833,965	+				-3.0
2,833,966	-		Psyr_2446	0.10	+0.6
2,833,986	+		Psyr_2446	0.12	-1.0
2,833,987	-		Psyr_2446	0.13	-0.7
2,834,196	+		Psyr_2446	0.37	-0.6
2,834,197	-		Psyr_2446	0.37	-0.8
2,834,197	-		Psyr_2446	0.37	+1.1
2,834,248	-		Psyr_2446	0.44	-1.0
2,834,248	-		Psyr_2446	0.44	+0.2
2,834,259	-		Psyr_2446	0.45	-0.0
2,834,301	+		Psyr_2446	0.50	+0.6
2,834,302	-		Psyr_2446	0.50	+1.6
2,834,425	-		Psyr_2446	0.65	+0.9
2,834,427	+		Psyr_2446	0.65	+0.2
2,834,428	-		Psyr_2446	0.65	+1.3
2,834,440	-		Psyr_2446	0.66	+0.4
2,834,446	-		Psyr_2446	0.67	+1.8
2,834,511	-		Psyr_2446	0.75	-0.8
2,834,516	-		Psyr_2446	0.75	-0.4
2,834,668	-				+1.2
2,834,823	+		Psyr_2447	0.17	-0.4
2,834,848	+		Psyr_2447	0.21	+0.6
2,834,848	+		Psyr_2447	0.21	-0.4
2,834,849	-		Psyr_2447	0.21	-0.0
2,834,849	-		Psyr_2447	0.21	+0.1
2,834,849	-		Psyr_2447	0.21	+0.7