Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2273

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,637,866	+				+1.9
2,637,866	+				-1.2
2,637,873	-				-0.0
2,638,158	+		Psyr_2272	0.39	+1.8
2,638,158	+		Psyr_2272	0.39	-0.0
2,638,158	+		Psyr_2272	0.39	+0.7
2,638,158	+		Psyr_2272	0.39	-0.1
2,638,158	+		Psyr_2272	0.39	-0.3
2,638,159	-		Psyr_2272	0.39	+0.0
2,638,159	-		Psyr_2272	0.39	-0.8
2,638,159	-		Psyr_2272	0.39	+0.3
2,638,159	-		Psyr_2272	0.39	+1.2
2,638,207	-		Psyr_2272	0.47	+2.4
2,638,294	-		Psyr_2272	0.61	-0.8
2,638,483	-				+1.0
2,638,483	-				+1.4
2,638,617	-				-3.0
2,638,646	+				-0.7
2,638,647	-				-0.9
2,638,647	-				-0.6
2,638,647	-				-2.2
2,638,692	-				+0.3
2,638,749	-				-0.1
2,638,865	+				-0.1
2,638,865	+				-0.8
2,638,865	+				+1.6
2,638,865	+				+3.1
2,638,865	+				+1.4
2,638,865	+				-0.5
2,638,866	-				+0.5
2,638,869	+				-1.9
2,638,870	-				+0.3
2,639,127	-		Psyr_2273	0.23	-0.0
2,639,279	+		Psyr_2273	0.35	+1.1
2,639,280	-		Psyr_2273	0.35	-0.0
2,639,355	-		Psyr_2273	0.40	+0.4
2,639,399	+		Psyr_2273	0.44	+1.2
2,639,399	+		Psyr_2273	0.44	+0.4
2,639,399	+		Psyr_2273	0.44	+1.1
2,639,399	+		Psyr_2273	0.44	+2.0
2,639,399	+		Psyr_2273	0.44	+0.2
2,639,399	+		Psyr_2273	0.44	+0.6
2,639,399	+		Psyr_2273	0.44	+0.2
2,639,400	-		Psyr_2273	0.44	-0.2
2,639,400	-		Psyr_2273	0.44	-0.0
2,639,566	+		Psyr_2273	0.56	-2.8
2,639,627	+		Psyr_2273	0.61	+0.1
2,639,627	+		Psyr_2273	0.61	+0.1
2,639,699	+		Psyr_2273	0.66	+0.2
2,639,846	+				+1.6
2,640,098	+				+0.1
2,640,099	-				+0.8
2,640,135	-				+1.4
2,640,135	-				-1.1
2,640,219	+				-0.7
2,640,219	+				+3.9
2,640,219	+				-0.4
2,640,251	-				-0.9
2,640,251	-				-0.5
2,640,268	+				-0.7
2,640,301	+				-0.4
2,640,301	+				+2.6
2,640,301	+				+0.9
2,640,301	+				+1.6
2,640,301	+				-0.5
2,640,301	+				+0.2
2,640,301	+				-0.0
2,640,301	+				-0.5
2,640,301	+				-0.7
2,640,301	+				+1.0
2,640,301	+				+0.2
2,640,301	+				-0.1
2,640,302	-				-0.2
2,640,302	-				-2.5
2,640,302	-				-2.1
2,640,302	-				+2.6
2,640,302	-				+0.6
2,640,302	-				+0.4
2,640,302	-				-1.7
2,640,302	-				+0.5
2,640,425	+		Psyr_2274	0.13	-0.8
2,640,425	+		Psyr_2274	0.13	-0.1
2,640,425	+		Psyr_2274	0.13	-0.5
2,640,426	-		Psyr_2274	0.13	-0.5
2,640,426	-		Psyr_2274	0.13	+0.3
2,640,426	-		Psyr_2274	0.13	-0.7
2,640,426	-		Psyr_2274	0.13	-1.4
2,640,485	+		Psyr_2274	0.20	+1.6
2,640,485	+		Psyr_2274	0.20	-1.2
2,640,486	-		Psyr_2274	0.20	-1.6
2,641,003	+		Psyr_2274	0.76	-1.9
2,641,091	+		Psyr_2274	0.86	-0.2
2,641,091	+		Psyr_2274	0.86	-0.6
2,641,092	-		Psyr_2274	0.86	-0.5
2,641,092	-		Psyr_2274	0.86	+0.9
2,641,092	-		Psyr_2274	0.86	+2.2
2,641,092	-		Psyr_2274	0.86	-1.0
2,641,092	-		Psyr_2274	0.86	-0.8