Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2246

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,610,681	-		Psyr_2245	0.46	-1.1
2,610,681	-		Psyr_2245	0.46	-0.3
2,610,954	-		Psyr_2245	0.77	+0.3
2,611,100	-				+3.1
2,611,224	-				-0.2
2,611,258	+				-1.3
2,611,258	+				-0.5
2,611,272	+				+1.2
2,611,366	-				-0.5
2,611,366	-				-1.0
2,611,718	+		Psyr_2246	0.15	+3.6
2,611,742	+		Psyr_2246	0.16	+1.6
2,611,743	-		Psyr_2246	0.16	-0.0
2,611,743	-		Psyr_2246	0.16	-2.3
2,611,803	-		Psyr_2246	0.19	-0.6
2,611,826	+		Psyr_2246	0.20	-1.0
2,611,826	+		Psyr_2246	0.20	-0.8
2,611,871	+		Psyr_2246	0.23	-1.0
2,611,871	+		Psyr_2246	0.23	-0.6
2,611,871	+		Psyr_2246	0.23	+0.7
2,611,872	-		Psyr_2246	0.23	-1.9
2,611,872	-		Psyr_2246	0.23	+0.9
2,611,872	-		Psyr_2246	0.23	-0.4
2,612,018	+		Psyr_2246	0.30	+1.0
2,612,111	-		Psyr_2246	0.35	-2.1
2,612,122	+		Psyr_2246	0.36	+0.6
2,612,122	+		Psyr_2246	0.36	-2.3
2,612,210	+		Psyr_2246	0.41	-0.4
2,612,211	-		Psyr_2246	0.41	-0.6
2,612,244	-		Psyr_2246	0.42	-0.4
2,612,293	-		Psyr_2246	0.45	-0.3
2,612,572	+		Psyr_2246	0.60	+1.2
2,612,944	-		Psyr_2246	0.79	-0.1
2,612,944	-		Psyr_2246	0.79	-0.0
2,612,944	-		Psyr_2246	0.79	-0.4
2,613,455	-				-1.0
2,613,578	+				-0.6
2,613,578	+				-0.0
2,613,578	+				+0.1
2,613,578	+				-0.2
2,613,578	+				-1.6
2,613,579	-				-0.3
2,613,579	-				-1.0
2,613,636	+				-1.6
2,613,638	+				+1.2
2,613,638	+				+1.8
2,613,638	+				-2.1
2,613,827	-		Psyr_2247	0.32	-0.7
2,613,828	+		Psyr_2247	0.32	+0.3
2,613,828	+		Psyr_2247	0.32	-0.0
2,613,829	-		Psyr_2247	0.32	-1.9
2,613,829	-		Psyr_2247	0.32	+1.6
2,613,829	-		Psyr_2247	0.32	-0.4