Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2142

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,499,906	+				-0.0
2,499,906	+				+0.0
2,499,984	+				-1.8
2,499,985	-				+1.2
2,499,985	-				-1.1
2,500,157	+		Psyr_2140	0.62	+0.2
2,500,157	+		Psyr_2140	0.62	+1.6
2,500,157	+		Psyr_2140	0.62	+0.5
2,500,158	-		Psyr_2140	0.62	-2.2
2,500,158	-		Psyr_2140	0.62	-1.7
2,500,158	-		Psyr_2140	0.62	-0.6
2,500,158	-		Psyr_2140	0.62	+0.9
2,500,158	-		Psyr_2140	0.62	-1.3
2,500,226	+				-0.3
2,500,227	-				-1.0
2,500,309	+		Psyr_2141	0.16	-1.5
2,500,309	+		Psyr_2141	0.16	-1.1
2,500,309	+		Psyr_2141	0.16	-0.7
2,500,310	-		Psyr_2141	0.16	-0.3
2,500,310	-		Psyr_2141	0.16	+0.3
2,500,420	-		Psyr_2141	0.44	-1.3
2,500,665	+				-2.4
2,500,679	+				-2.2
2,500,679	+				-1.5
2,500,679	+				-1.3
2,500,679	+				+0.7
2,500,680	-				-0.6
2,500,680	-				+1.1
2,500,682	+				+1.5
2,500,683	-				-2.6
2,500,683	-				+1.1
2,500,683	-				+1.2
2,500,713	-				+1.0
2,500,778	-				+2.5
2,500,933	+				-2.0
2,500,933	+				+0.2
2,500,933	+				+1.2
2,500,933	+				+1.0
2,500,933	+				-0.2
2,500,933	+				-1.5
2,500,934	-				+3.1
2,500,934	-				+1.7
2,500,934	-				-2.6
2,500,934	-				+0.0
2,500,934	-				+1.5
2,500,934	-				-1.3
2,500,934	-				+3.8
2,500,934	-				+1.7
2,500,934	-				+0.0
2,500,934	-				-0.5
2,500,990	+		Psyr_2142	0.12	+0.5
2,500,991	-		Psyr_2142	0.12	+3.1
2,500,991	-		Psyr_2142	0.12	-0.4
2,501,182	+		Psyr_2142	0.31	-2.2
2,501,183	-		Psyr_2142	0.31	-0.3
2,501,290	+		Psyr_2142	0.41	-0.5
2,501,290	+		Psyr_2142	0.41	+0.0
2,501,290	+		Psyr_2142	0.41	-0.4
2,501,290	+		Psyr_2142	0.41	-1.3
2,501,291	-		Psyr_2142	0.41	-1.4
2,501,291	-		Psyr_2142	0.41	+0.8
2,501,298	+		Psyr_2142	0.42	+0.4
2,501,298	+		Psyr_2142	0.42	-1.9
2,501,298	+		Psyr_2142	0.42	+0.2
2,501,298	+		Psyr_2142	0.42	-0.1
2,501,298	+		Psyr_2142	0.42	-0.9
2,501,298	+		Psyr_2142	0.42	-0.2
2,501,299	-		Psyr_2142	0.42	+0.5
2,501,299	-				+2.1
2,501,299	-		Psyr_2142	0.42	-0.8
2,501,299	-		Psyr_2142	0.42	-1.3
2,501,299	-		Psyr_2142	0.42	-0.2
2,501,299	-		Psyr_2142	0.42	-1.2
2,501,299	-		Psyr_2142	0.42	+0.2
2,501,437	+		Psyr_2142	0.55	-0.7
2,501,518	+		Psyr_2142	0.63	-1.2
2,501,519	-		Psyr_2142	0.63	-2.2
2,501,519	-		Psyr_2142	0.63	-0.4
2,501,519	-		Psyr_2142	0.63	+1.7
2,501,519	-		Psyr_2142	0.63	-1.3
2,501,527	+		Psyr_2142	0.64	-1.1
2,501,740	+		Psyr_2142	0.85	-1.4
2,501,740	+		Psyr_2142	0.85	-1.1
2,501,741	-		Psyr_2142	0.85	-1.1
2,501,741	-		Psyr_2142	0.85	+0.2
2,501,741	-		Psyr_2142	0.85	+0.2
2,501,908	+				+1.0
2,501,908	+				-0.8
2,501,909	-				-0.3
2,501,909	-				+0.9
2,501,909	-				+0.1
2,501,910	+				+1.3
2,501,910	+				-0.3
2,501,910	+				-0.3
2,501,910	+				-0.4
2,501,910	+				-0.1
2,501,926	+				-0.2
2,501,985	+				+1.8
2,502,044	-				+0.6
2,502,080	+				-1.3
2,502,081	-				-2.6
2,502,130	+				+0.1