Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1787

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,036,908	-		Psyr_1785	0.82	-0.9
2,036,908	-		Psyr_1785	0.82	+2.9
2,036,943	+		Psyr_1785	0.84	+0.0
2,036,943	+		Psyr_1785	0.84	+1.9
2,036,943	+		Psyr_1785	0.84	+0.1
2,036,944	-		Psyr_1785	0.84	-0.5
2,036,944	-		Psyr_1785	0.84	+0.9
2,036,944	-		Psyr_1785	0.84	-1.4
2,036,965	-		Psyr_1785	0.85	+2.0
2,036,982	+		Psyr_1785	0.86	-0.3
2,036,983	-		Psyr_1785	0.86	+1.3
2,036,983	-		Psyr_1785	0.86	+0.9
2,036,983	-		Psyr_1785	0.86	-1.6
2,037,034	-		Psyr_1785	0.90	+0.4
2,037,096	+				-0.6
2,037,096	+				-0.4
2,037,097	-				-2.0
2,037,097	-				-0.2
2,037,287	+				+0.1
2,037,287	+				+0.6
2,037,288	-				+1.1
2,037,288	-				-2.1
2,037,496	+				+0.4
2,037,593	-		Psyr_1786	0.26	-0.8
2,037,595	+		Psyr_1786	0.27	-0.4
2,037,595	+		Psyr_1786	0.27	-1.3
2,037,733	+		Psyr_1786	0.59	-0.1
2,037,733	+		Psyr_1786	0.59	-0.8
2,037,733	+		Psyr_1786	0.59	+1.2
2,037,733	+		Psyr_1786	0.59	-0.3
2,037,734	-		Psyr_1786	0.59	+3.4
2,037,880	-				-1.8
2,037,882	+				-0.8
2,037,882	+				-2.8
2,037,883	-				-1.0
2,038,314	+		Psyr_1787	0.32	+0.7
2,038,315	-		Psyr_1787	0.32	+1.4
2,038,357	-		Psyr_1787	0.35	+0.1
2,038,357	-		Psyr_1787	0.35	-3.0
2,038,386	+		Psyr_1787	0.37	+0.3
2,038,386	+		Psyr_1787	0.37	+1.1
2,038,387	-		Psyr_1787	0.37	-0.1
2,038,422	+		Psyr_1787	0.40	+0.4
2,038,539	+		Psyr_1787	0.49	+0.4
2,038,540	-		Psyr_1787	0.49	+0.4
2,038,562	+		Psyr_1787	0.51	+1.4
2,038,789	-		Psyr_1787	0.68	-0.1
2,038,800	+		Psyr_1787	0.69	+0.2
2,038,806	+		Psyr_1787	0.70	+0.6
2,038,806	+		Psyr_1787	0.70	+1.0
2,038,806	+		Psyr_1787	0.70	+0.4
2,038,807	-		Psyr_1787	0.70	+1.1
2,038,882	-		Psyr_1787	0.75	-1.9
2,039,196	+				+0.9
2,039,197	-				-0.4
2,039,399	+				-1.6
2,039,459	+				+4.0
2,039,746	+		Psyr_1788	0.18	-0.8
2,039,746	+		Psyr_1788	0.18	+2.8
2,039,746	+		Psyr_1788	0.18	+1.3
2,039,963	+		Psyr_1788	0.36	+0.3
2,039,963	+		Psyr_1788	0.36	+0.6
2,039,964	-		Psyr_1788	0.36	+2.3
2,039,964	-		Psyr_1788	0.36	-0.4
2,039,964	-		Psyr_1788	0.36	+0.8
2,039,964	-		Psyr_1788	0.36	-0.4