Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1769

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
2,012,117	+		Psyr_1768	0.83	+0.5
2,012,117	+		Psyr_1768	0.83	+0.5
2,012,117	+		Psyr_1768	0.83	+0.7
2,012,117	+		Psyr_1768	0.83	-0.8
2,012,117	+		Psyr_1768	0.83	-1.8
2,012,117	+		Psyr_1768	0.83	+1.1
2,012,118	-		Psyr_1768	0.83	-1.2
2,012,118	-		Psyr_1768	0.83	-0.8
2,012,118	-		Psyr_1768	0.83	+2.0
2,012,118	-		Psyr_1768	0.83	+2.5
2,012,118	-		Psyr_1768	0.83	+0.2
2,012,118	-		Psyr_1768	0.83	+0.7
2,012,118	-		Psyr_1768	0.83	+1.1
2,012,126	+		Psyr_1768	0.84	+1.9
2,012,126	+		Psyr_1768	0.84	-0.8
2,012,126	+		Psyr_1768	0.84	+0.3
2,012,127	-		Psyr_1768	0.84	+0.7
2,012,209	+		Psyr_1768	0.85	-1.0
2,012,210	-		Psyr_1768	0.85	+1.5
2,012,212	+		Psyr_1768	0.85	+1.3
2,012,213	-		Psyr_1768	0.85	+0.2
2,012,329	+		Psyr_1768	0.87	-0.5
2,012,329	+		Psyr_1768	0.87	+1.1
2,012,329	+		Psyr_1768	0.87	+1.5
2,012,329	+		Psyr_1768	0.87	-1.1
2,012,330	-		Psyr_1768	0.87	-0.1
2,012,330	-		Psyr_1768	0.87	+0.2
2,012,330	-		Psyr_1768	0.87	+0.0
2,012,330	-		Psyr_1768	0.87	+1.2
2,012,410	+		Psyr_1768	0.89	+0.7
2,012,411	-		Psyr_1768	0.89	-1.0
2,012,411	-		Psyr_1768	0.89	-1.0
2,012,411	-		Psyr_1768	0.89	-0.7
2,012,513	+				-0.5
2,012,513	+				+0.1
2,012,513	+				-0.2
2,012,513	+				+4.1
2,012,517	+				+1.1
2,012,517	+				-0.1
2,012,517	+				+0.6
2,012,517	+				+2.1
2,012,517	+				-0.0
2,012,517	+				-0.7
2,012,517	+				+1.0
2,012,517	+				-1.7
2,012,518	-				+2.3
2,012,518	-				-0.9
2,012,518	-				-2.8
2,012,518	-				+0.5
2,012,518	-				-1.0
2,012,518	-				-0.1
2,012,518	-				-1.1
2,012,518	-				-0.4
2,012,518	-				-0.3
2,012,518	-				-0.8
2,012,518	-				+0.4
2,012,518	-				-0.8
2,012,522	-				+0.1
2,012,604	-				-1.1
2,012,604	-				+0.5
2,012,610	+				-0.5
2,012,610	+				-0.5
2,012,638	+				-0.1
2,012,638	+				-0.1
2,012,638	+				+1.5
2,012,638	+				+1.2
2,012,638	+				+0.5
2,012,638	+				-1.8
2,012,639	-				+0.1
2,012,639	-				+0.6
2,012,639	-				-0.7
2,012,905	-				+1.7
2,013,093	+				+1.0
2,013,093	+				-0.3
2,013,093	+				-0.6
2,013,093	+				+0.1
2,013,093	+				-0.7
2,013,094	-				+3.5
2,013,094	-				+1.1
2,013,094	-				-0.2
2,013,094	-				+0.2
2,013,094	-				+1.5
2,013,094	-				+1.4
2,013,094	-				-0.1
2,013,094	-				-0.9
2,013,094	-				-0.3
2,013,094	-				-0.2
2,013,094	-				-1.1
2,013,094	-				-0.2
2,013,094	-				-2.6
2,013,095	+				+0.1
2,013,095	+				-0.0
2,013,096	-				+1.5
2,013,123	+				+0.3
2,013,124	-				-1.3
2,013,151	-		Psyr_1769	0.11	-1.7
2,013,388	-		Psyr_1769	0.31	+0.9
2,013,749	+		Psyr_1769	0.62	+1.2
2,013,749	+		Psyr_1769	0.62	+0.2
2,013,749	+		Psyr_1769	0.62	+1.3
2,013,750	-		Psyr_1769	0.63	+1.0
2,013,877	-		Psyr_1769	0.74	+0.0
2,013,877	-		Psyr_1769	0.74	-0.7
2,013,877	-		Psyr_1769	0.74	-0.8
2,013,981	+		Psyr_1769	0.83	+1.0
2,013,982	-		Psyr_1769	0.83	+0.5
2,013,990	+		Psyr_1769	0.83	-2.2
2,013,990	+		Psyr_1769	0.83	-1.0
2,013,990	+		Psyr_1769	0.83	+0.5
2,013,990	+		Psyr_1769	0.83	-0.5
2,013,990	+		Psyr_1769	0.83	+0.6
2,013,990	+		Psyr_1769	0.83	+0.1
2,013,991	-		Psyr_1769	0.84	+0.2
2,013,991	-		Psyr_1769	0.84	+0.1
2,013,991	-		Psyr_1769	0.84	+0.9
2,013,991	-		Psyr_1769	0.84	+3.5
2,013,991	-		Psyr_1769	0.84	+0.5
2,013,991	-		Psyr_1769	0.84	+1.0
2,013,991	-		Psyr_1769	0.84	-0.3
2,013,991	-		Psyr_1769	0.84	+0.9
2,014,148	+				-0.7
2,014,292	+				-1.6
2,014,292	+				-0.5
2,014,292	+				+0.2
2,014,292	+				+0.5
2,014,293	-				-0.2
2,014,293	-				+0.4
2,014,293	-				+1.2
2,014,293	-				+1.1
2,014,293	-				+0.8
2,014,293	-				+0.4
2,014,710	+		Psyr_1770	0.48	-0.7
2,014,711	-		Psyr_1770	0.48	-0.5
2,014,711	-		Psyr_1770	0.48	-0.8
2,014,711	-		Psyr_1770	0.48	-0.4
2,014,711	-		Psyr_1770	0.48	-1.3
2,014,711	-		Psyr_1770	0.48	+3.1
2,014,971	+		Psyr_1770	0.72	+0.5
2,014,972	-		Psyr_1770	0.72	-1.0
2,015,025	+		Psyr_1770	0.77	-0.8
2,015,026	-		Psyr_1770	0.77	-1.2