Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1447 and Psyr_1448 are separated by 15 nucleotides Psyr_1448 and Psyr_1449 are separated by 19 nucleotides Psyr_1449 and Psyr_1450 overlap by 4 nucleotides Psyr_1450 and Psyr_1451 are separated by 79 nucleotides Psyr_1451 and Psyr_1452 are separated by 9 nucleotides
Psyr_1447: Psyr_1447 - conserved hypothetical protein, at 1,636,875 to 1,637,267
_1447
Psyr_1448: Psyr_1448 - conserved hypothetical protein, at 1,637,283 to 1,637,651
_1448
Psyr_1449: Psyr_1449 - hypothetical protein, at 1,637,671 to 1,637,910
_1449
Psyr_1450: Psyr_1450 - Plasmid conserved hypothetical protein, RAQPRD, at 1,637,907 to 1,638,269
_1450
Psyr_1451: Psyr_1451 - hypothetical protein, at 1,638,349 to 1,638,681
_1451
Psyr_1452: Psyr_1452 - conserved hypothetical protein, at 1,638,691 to 1,640,154
_1452
Position (kb) 1637
1638
1639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1636.968 kb on + strand, within Psyr_1447 at 1636.969 kb on - strand, within Psyr_1447 at 1637.062 kb on - strand, within Psyr_1447 at 1637.175 kb on - strand, within Psyr_1447 at 1637.277 kb on + strand at 1637.314 kb on + strand at 1637.314 kb on + strand at 1637.315 kb on - strand at 1637.315 kb on - strand at 1637.315 kb on - strand at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.450 kb on + strand, within Psyr_1448 at 1637.451 kb on - strand, within Psyr_1448 at 1637.451 kb on - strand, within Psyr_1448 at 1637.451 kb on - strand, within Psyr_1448 at 1637.451 kb on - strand, within Psyr_1448 at 1637.485 kb on + strand, within Psyr_1448 at 1637.485 kb on + strand, within Psyr_1448 at 1637.485 kb on + strand, within Psyr_1448 at 1637.510 kb on + strand, within Psyr_1448 at 1637.510 kb on + strand, within Psyr_1448 at 1637.511 kb on - strand, within Psyr_1448 at 1637.561 kb on + strand, within Psyr_1448 at 1637.561 kb on + strand, within Psyr_1448 at 1637.561 kb on + strand, within Psyr_1448 at 1637.655 kb on + strand at 1637.655 kb on + strand at 1637.694 kb on + strand at 1637.694 kb on + strand at 1637.745 kb on + strand, within Psyr_1449 at 1637.745 kb on + strand, within Psyr_1449 at 1637.775 kb on - strand, within Psyr_1449 at 1637.775 kb on - strand, within Psyr_1449 at 1637.782 kb on + strand, within Psyr_1449 at 1637.782 kb on + strand, within Psyr_1449 at 1637.782 kb on + strand, within Psyr_1449 at 1637.803 kb on + strand, within Psyr_1449 at 1637.936 kb on - strand at 1637.936 kb on - strand at 1638.175 kb on + strand, within Psyr_1450 at 1638.175 kb on + strand, within Psyr_1450 at 1638.175 kb on + strand, within Psyr_1450 at 1638.175 kb on + strand, within Psyr_1450 at 1638.176 kb on - strand, within Psyr_1450 at 1638.176 kb on - strand, within Psyr_1450 at 1638.176 kb on - strand, within Psyr_1450 at 1638.176 kb on - strand, within Psyr_1450 at 1638.198 kb on + strand, within Psyr_1450 at 1638.198 kb on + strand, within Psyr_1450 at 1638.198 kb on + strand, within Psyr_1450 at 1638.199 kb on - strand, within Psyr_1450 at 1638.199 kb on - strand, within Psyr_1450 at 1638.199 kb on - strand, within Psyr_1450 at 1638.290 kb on + strand at 1638.291 kb on - strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.298 kb on + strand at 1638.299 kb on - strand at 1638.299 kb on - strand at 1638.299 kb on - strand at 1638.299 kb on - strand at 1638.299 kb on - strand at 1638.336 kb on + strand at 1638.351 kb on - strand at 1638.351 kb on - strand at 1638.351 kb on - strand at 1638.588 kb on + strand, within Psyr_1451 at 1638.666 kb on - strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.793 kb on + strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.794 kb on - strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.797 kb on + strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.798 kb on - strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.799 kb on + strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.800 kb on - strand at 1638.872 kb on + strand, within Psyr_1452 at 1638.872 kb on + strand, within Psyr_1452 at 1638.872 kb on + strand, within Psyr_1452 at 1638.921 kb on + strand, within Psyr_1452 at 1638.998 kb on + strand, within Psyr_1452 at 1638.999 kb on - strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.064 kb on + strand, within Psyr_1452 at 1639.065 kb on - strand, within Psyr_1452 at 1639.065 kb on - strand, within Psyr_1452 at 1639.065 kb on - strand, within Psyr_1452 at 1639.065 kb on - strand, within Psyr_1452 at 1639.083 kb on - strand, within Psyr_1452 at 1639.122 kb on + strand, within Psyr_1452 at 1639.122 kb on + strand, within Psyr_1452 at 1639.122 kb on + strand, within Psyr_1452 at 1639.123 kb on - strand, within Psyr_1452 at 1639.136 kb on + strand, within Psyr_1452 at 1639.136 kb on + strand, within Psyr_1452 at 1639.137 kb on - strand at 1639.166 kb on + strand, within Psyr_1452 at 1639.166 kb on + strand, within Psyr_1452 at 1639.166 kb on + strand, within Psyr_1452 at 1639.166 kb on + strand, within Psyr_1452 at 1639.166 kb on + strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.167 kb on - strand, within Psyr_1452 at 1639.248 kb on + strand, within Psyr_1452 at 1639.248 kb on + strand, within Psyr_1452 at 1639.249 kb on - strand, within Psyr_1452 at 1639.259 kb on + strand, within Psyr_1452 at 1639.260 kb on - strand, within Psyr_1452 at 1639.260 kb on - strand, within Psyr_1452
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 1,636,968 + Psyr_1447 0.24 -0.2 1,636,969 - Psyr_1447 0.24 -2.0 1,637,062 - Psyr_1447 0.48 +2.7 1,637,175 - Psyr_1447 0.76 +1.1 1,637,277 + -0.4 1,637,314 + -0.1 1,637,314 + -0.1 1,637,315 - -0.1 1,637,315 - +0.2 1,637,315 - -1.1 1,637,450 + Psyr_1448 0.45 +3.2 1,637,450 + Psyr_1448 0.45 +0.4 1,637,450 + Psyr_1448 0.45 +0.1 1,637,450 + Psyr_1448 0.45 -0.8 1,637,450 + Psyr_1448 0.45 +0.4 1,637,450 + Psyr_1448 0.45 -0.9 1,637,450 + Psyr_1448 0.45 -1.2 1,637,450 + Psyr_1448 0.45 -1.3 1,637,450 + Psyr_1448 0.45 -2.3 1,637,450 + Psyr_1448 0.45 -0.8 1,637,451 - Psyr_1448 0.46 -0.2 1,637,451 - Psyr_1448 0.46 +0.8 1,637,451 - Psyr_1448 0.46 +1.9 1,637,451 - Psyr_1448 0.46 -1.2 1,637,485 + Psyr_1448 0.55 +1.6 1,637,485 + Psyr_1448 0.55 -1.8 1,637,485 + Psyr_1448 0.55 +0.0 1,637,510 + Psyr_1448 0.62 -0.8 1,637,510 + Psyr_1448 0.62 -1.3 1,637,511 - Psyr_1448 0.62 +2.0 1,637,561 + Psyr_1448 0.75 +0.1 1,637,561 + Psyr_1448 0.75 -0.8 1,637,561 + Psyr_1448 0.75 +1.6 1,637,655 + -1.4 1,637,655 + -1.6 1,637,694 + -0.0 1,637,694 + -0.4 1,637,745 + Psyr_1449 0.31 -0.4 1,637,745 + Psyr_1449 0.31 -0.4 1,637,775 - Psyr_1449 0.43 -0.4 1,637,775 - Psyr_1449 0.43 -0.2 1,637,782 + Psyr_1449 0.46 -0.2 1,637,782 + Psyr_1449 0.46 -0.9 1,637,782 + Psyr_1449 0.46 +0.7 1,637,803 + Psyr_1449 0.55 -0.0 1,637,936 - +0.0 1,637,936 - -1.0 1,638,175 + Psyr_1450 0.74 +1.0 1,638,175 + Psyr_1450 0.74 -0.3 1,638,175 + Psyr_1450 0.74 -1.5 1,638,175 + Psyr_1450 0.74 -0.7 1,638,176 - Psyr_1450 0.74 +1.1 1,638,176 - Psyr_1450 0.74 +0.1 1,638,176 - Psyr_1450 0.74 +1.0 1,638,176 - Psyr_1450 0.74 -0.9 1,638,198 + Psyr_1450 0.80 -0.0 1,638,198 + Psyr_1450 0.80 -1.7 1,638,198 + Psyr_1450 0.80 -0.7 1,638,199 - Psyr_1450 0.80 +1.0 1,638,199 - Psyr_1450 0.80 +0.4 1,638,199 - Psyr_1450 0.80 +2.6 1,638,290 + +2.7 1,638,291 - -0.9 1,638,298 + -0.8 1,638,298 + -1.0 1,638,298 + +0.6 1,638,298 + -1.2 1,638,298 + +0.2 1,638,298 + +1.4 1,638,298 + -1.6 1,638,299 - +1.2 1,638,299 - -1.0 1,638,299 - +0.1 1,638,299 - +1.6 1,638,299 - +0.3 1,638,336 + -2.5 1,638,351 - -0.6 1,638,351 - -0.8 1,638,351 - -2.3 1,638,588 + Psyr_1451 0.72 +1.4 1,638,666 - +0.1 1,638,793 + -1.4 1,638,793 + +0.6 1,638,793 + -2.2 1,638,793 + -0.8 1,638,793 + -0.6 1,638,793 + +0.6 1,638,793 + -0.0 1,638,793 + +0.8 1,638,793 + -0.3 1,638,793 + +0.3 1,638,793 + +1.2 1,638,793 + +0.0 1,638,793 + +0.4 1,638,794 - +0.3 1,638,794 - +0.1 1,638,794 - +0.2 1,638,794 - -0.5 1,638,794 - -0.4 1,638,794 - +0.6 1,638,794 - +0.1 1,638,794 - -0.5 1,638,794 - -0.7 1,638,794 - -1.4 1,638,794 - -0.1 1,638,797 + +1.5 1,638,797 + +2.6 1,638,797 + +0.7 1,638,797 + -2.0 1,638,797 + -2.3 1,638,797 + -1.1 1,638,797 + -1.6 1,638,797 + -0.1 1,638,797 + -1.1 1,638,797 + +1.3 1,638,797 + +0.1 1,638,797 + +3.2 1,638,797 + -1.9 1,638,797 + -0.1 1,638,797 + -0.2 1,638,797 + -1.2 1,638,798 - -2.6 1,638,798 - -1.2 1,638,798 - +0.3 1,638,798 - -0.2 1,638,798 - -1.2 1,638,798 - -1.4 1,638,798 - -1.5 1,638,798 - +0.8 1,638,798 - -2.2 1,638,799 + -1.3 1,638,799 + -0.4 1,638,799 + -3.2 1,638,799 + -1.0 1,638,799 + -0.0 1,638,799 + -1.0 1,638,799 + +0.1 1,638,799 + -1.2 1,638,799 + -1.3 1,638,800 - +1.1 1,638,800 - -0.6 1,638,800 - -0.3 1,638,800 - +0.1 1,638,800 - -0.0 1,638,800 - +0.4 1,638,800 - -0.0 1,638,800 - -0.3 1,638,800 - +0.5 1,638,872 + Psyr_1452 0.12 +4.4 1,638,872 + Psyr_1452 0.12 -0.6 1,638,872 + Psyr_1452 0.12 -2.0 1,638,921 + Psyr_1452 0.16 +0.7 1,638,998 + Psyr_1452 0.21 -0.5 1,638,999 - Psyr_1452 0.21 +1.2 1,639,064 + Psyr_1452 0.25 -1.9 1,639,064 + Psyr_1452 0.25 -2.4 1,639,064 + Psyr_1452 0.25 +0.8 1,639,064 + Psyr_1452 0.25 -0.0 1,639,064 + Psyr_1452 0.25 -0.6 1,639,064 + Psyr_1452 0.25 -0.0 1,639,065 - Psyr_1452 0.26 +0.6 1,639,065 - Psyr_1452 0.26 +1.4 1,639,065 - Psyr_1452 0.26 -0.6 1,639,065 - Psyr_1452 0.26 +0.2 1,639,083 - Psyr_1452 0.27 +0.0 1,639,122 + Psyr_1452 0.29 -1.0 1,639,122 + Psyr_1452 0.29 +0.4 1,639,122 + Psyr_1452 0.29 +0.5 1,639,123 - Psyr_1452 0.30 -0.2 1,639,136 + Psyr_1452 0.30 +0.6 1,639,136 + Psyr_1452 0.30 +0.5 1,639,137 - +1.6 1,639,166 + Psyr_1452 0.32 +1.2 1,639,166 + Psyr_1452 0.32 -0.4 1,639,166 + Psyr_1452 0.32 +0.6 1,639,166 + Psyr_1452 0.32 -2.2 1,639,166 + Psyr_1452 0.32 +0.8 1,639,167 - Psyr_1452 0.33 +0.1 1,639,167 - Psyr_1452 0.33 -1.1 1,639,167 - Psyr_1452 0.33 -1.1 1,639,167 - Psyr_1452 0.33 -0.8 1,639,167 - Psyr_1452 0.33 -1.2 1,639,167 - Psyr_1452 0.33 -0.1 1,639,248 + Psyr_1452 0.38 +0.6 1,639,248 + Psyr_1452 0.38 -0.6 1,639,249 - Psyr_1452 0.38 +1.0 1,639,259 + Psyr_1452 0.39 +1.7 1,639,260 - Psyr_1452 0.39 +4.7 1,639,260 - Psyr_1452 0.39 -0.6
Or see this region's nucleotide sequence