Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1179

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
1,331,814	-				-0.6
1,331,814	-				+0.5
1,331,830	+				+1.0
1,331,835	+				+1.1
1,331,836	-				-0.6
1,331,836	-				+0.3
1,331,948	+				-0.4
1,331,948	+				+0.1
1,331,948	+				-0.3
1,331,948	+				-3.0
1,331,949	-				-0.2
1,332,126	+		Psyr_1178	0.45	+1.8
1,332,126	+		Psyr_1178	0.45	-1.2
1,332,126	+		Psyr_1178	0.45	+0.6
1,332,126	+		Psyr_1178	0.45	-0.6
1,332,126	+		Psyr_1178	0.45	-1.2
1,332,127	-		Psyr_1178	0.46	+0.1
1,332,127	-		Psyr_1178	0.46	+1.6
1,332,127	-		Psyr_1178	0.46	-2.1
1,332,127	-		Psyr_1178	0.46	+1.3
1,332,127	-		Psyr_1178	0.46	-0.2
1,332,127	-		Psyr_1178	0.46	+0.6
1,332,127	-		Psyr_1178	0.46	-0.7
1,332,127	-		Psyr_1178	0.46	+0.9
1,332,127	-		Psyr_1178	0.46	-0.5
1,332,127	-		Psyr_1178	0.46	-0.0
1,332,127	-		Psyr_1178	0.46	-2.7
1,332,127	-		Psyr_1178	0.46	-0.3
1,332,247	+				-0.6
1,332,247	+				+0.4
1,332,247	+				+2.3
1,332,247	+				+0.1
1,332,248	-				+0.3
1,332,703	+		Psyr_1179	0.24	-0.5
1,332,703	+		Psyr_1179	0.24	-0.7
1,332,703	+		Psyr_1179	0.24	-1.2
1,332,703	+		Psyr_1179	0.24	-0.7
1,332,704	-		Psyr_1179	0.24	-0.9
1,332,705	+		Psyr_1179	0.24	-0.6
1,332,705	+		Psyr_1179	0.24	+1.0
1,332,705	+		Psyr_1179	0.24	-0.7
1,332,705	+		Psyr_1179	0.24	+0.6
1,332,705	+		Psyr_1179	0.24	-2.5
1,332,705	+		Psyr_1179	0.24	-0.6
1,332,705	+		Psyr_1179	0.24	-0.0
1,332,705	+		Psyr_1179	0.24	-0.5
1,332,705	+		Psyr_1179	0.24	-1.4
1,332,705	+		Psyr_1179	0.24	-0.0
1,332,705	+		Psyr_1179	0.24	-2.7
1,332,705	+		Psyr_1179	0.24	+1.4
1,332,705	+		Psyr_1179	0.24	-1.3
1,332,705	+		Psyr_1179	0.24	-0.5
1,332,705	+		Psyr_1179	0.24	+1.3
1,332,706	-		Psyr_1179	0.25	-0.5
1,332,706	-		Psyr_1179	0.25	-0.7
1,332,706	-		Psyr_1179	0.25	-1.4
1,332,706	-		Psyr_1179	0.25	-1.4
1,332,706	-		Psyr_1179	0.25	-0.3
1,332,706	-		Psyr_1179	0.25	+1.7
1,332,706	-		Psyr_1179	0.25	-0.7
1,332,941	-		Psyr_1179	0.38	+0.4
1,333,448	+		Psyr_1179	0.67	-1.2
1,333,449	-		Psyr_1179	0.67	+0.6
1,333,449	-		Psyr_1179	0.67	-0.9
1,333,539	+		Psyr_1179	0.72	-0.2
1,333,539	+		Psyr_1179	0.72	-0.2
1,333,539	+		Psyr_1179	0.72	+0.8
1,333,539	+		Psyr_1179	0.72	+1.6
1,333,540	-		Psyr_1179	0.72	-0.4
1,333,540	-		Psyr_1179	0.72	+2.2
1,333,540	-		Psyr_1179	0.72	-0.7
1,333,540	-		Psyr_1179	0.72	-1.3
1,333,540	-		Psyr_1179	0.72	-1.5
1,333,540	-		Psyr_1179	0.72	-0.0
1,333,620	+		Psyr_1179	0.77	-1.9
1,333,620	+		Psyr_1179	0.77	+0.1
1,333,708	+		Psyr_1179	0.82	+0.3
1,333,708	+		Psyr_1179	0.82	+1.3
1,333,708	+		Psyr_1179	0.82	-1.0
1,333,709	-		Psyr_1179	0.82	-0.7
1,333,709	-		Psyr_1179	0.82	-0.3
1,333,709	-		Psyr_1179	0.82	+0.7
1,333,709	-		Psyr_1179	0.82	+0.6
1,333,710	+		Psyr_1179	0.82	+2.2
1,333,711	-		Psyr_1179	0.82	-1.7
1,333,909	-				-0.3
1,333,965	-				+0.1
1,334,057	+				-0.0
1,334,057	+				+0.2
1,334,057	+				+0.5
1,334,057	+				-0.7
1,334,057	+				+0.1
1,334,057	+				-0.6
1,334,057	+				+1.5
1,334,058	-				+0.4
1,334,058	-				-0.8
1,334,058	-				-0.7
1,334,058	-				-0.6
1,334,060	-				+0.6
1,334,060	-				-1.0
1,334,060	-				+2.9
1,334,091	-				-0.2
1,334,091	-				-1.6
1,334,109	+				-1.9
1,334,109	+				-0.2
1,334,185	+				-0.9
1,334,186	-				-0.5
1,334,186	-				-0.8
1,334,229	+				-0.4
1,334,229	+				-0.7
1,334,230	-				-0.1
1,334,230	-				-1.1
1,334,230	-				-0.3
1,334,230	-				-1.0
1,334,249	-				-0.3
1,334,249	-				-0.4
1,334,371	+		Psyr_1180	0.29	-0.6
1,334,371	+		Psyr_1180	0.29	-0.1
1,334,372	-		Psyr_1180	0.30	+1.1
1,334,372	-		Psyr_1180	0.30	-0.3
1,334,372	-		Psyr_1180	0.30	+0.8
1,334,372	-		Psyr_1180	0.30	-1.9
1,334,372	-		Psyr_1180	0.30	+0.4
1,334,391	+		Psyr_1180	0.34	-3.0
1,334,392	-		Psyr_1180	0.34	+0.3
1,334,392	-		Psyr_1180	0.34	-0.7
1,334,407	+		Psyr_1180	0.37	-2.3
1,334,408	-		Psyr_1180	0.37	-1.2
1,334,408	-		Psyr_1180	0.37	-0.6
1,334,408	-		Psyr_1180	0.37	+1.0
1,334,408	-		Psyr_1180	0.37	+0.1
1,334,458	+		Psyr_1180	0.47	-0.9
1,334,458	+		Psyr_1180	0.47	-0.5
1,334,556	+		Psyr_1180	0.67	+2.0
1,334,556	+		Psyr_1180	0.67	-0.1
1,334,556	+		Psyr_1180	0.67	+0.4
1,334,556	+		Psyr_1180	0.67	-1.2
1,334,557	-		Psyr_1180	0.68	-2.8
1,334,557	-		Psyr_1180	0.68	-1.2
1,334,666	-				+0.1
1,334,738	-				-0.3
1,334,762	+				-1.0
1,334,762	+				+1.6
1,334,762	+				-1.0
1,334,762	+				+1.3
1,334,762	+				-0.3
1,334,763	-				-0.2
1,334,763	-				-1.4
1,334,763	-				+0.6
1,334,763	-				+0.3
1,334,873	+		Psyr_1181	0.30	-1.1
1,334,949	+		Psyr_1181	0.56	+0.3
1,334,950	-		Psyr_1181	0.56	+0.4
1,334,950	-		Psyr_1181	0.56	-0.2
1,335,011	+		Psyr_1181	0.77	-1.0
1,335,011	+		Psyr_1181	0.77	-0.2
1,335,011	+		Psyr_1181	0.77	+1.3
1,335,011	+		Psyr_1181	0.77	-0.0
1,335,011	+		Psyr_1181	0.77	-0.1
1,335,011	+		Psyr_1181	0.77	+2.9
1,335,011	+		Psyr_1181	0.77	+1.6
1,335,011	+		Psyr_1181	0.77	+0.6
1,335,012	-		Psyr_1181	0.78	+0.2
1,335,012	-		Psyr_1181	0.78	-0.9
1,335,012	-		Psyr_1181	0.78	-1.2
1,335,012	-		Psyr_1181	0.78	-0.2
1,335,012	-		Psyr_1181	0.78	-0.2
1,335,012	-		Psyr_1181	0.78	-0.3
1,335,012	-		Psyr_1181	0.78	-2.7
1,335,012	-		Psyr_1181	0.78	-0.1
1,335,012	-		Psyr_1181	0.78	+0.4