Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0843

Experiment: KB with Avocatin A 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0842 and Psyr_0843 are separated by 17 nucleotidesPsyr_0843 and Psyr_0844 overlap by 1 nucleotidesPsyr_0844 and Psyr_0845 are separated by 11 nucleotides Psyr_0842: Psyr_0842 - Peptidoglycan glycosyltransferase, at 953,935 to 956,256 _0842 Psyr_0843: Psyr_0843 - TPR repeat protein, at 956,274 to 957,017 _0843 Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346 _0844 Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774 _0845 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 955.351 kb on + strand, within Psyr_0842at 955.351 kb on + strand, within Psyr_0842at 955.351 kb on + strand, within Psyr_0842at 955.351 kb on + strand, within Psyr_0842at 955.351 kb on + strand, within Psyr_0842at 955.352 kb on - strand, within Psyr_0842at 955.352 kb on - strand, within Psyr_0842at 955.382 kb on - strand, within Psyr_0842at 955.382 kb on - strand, within Psyr_0842at 955.382 kb on - strand, within Psyr_0842at 955.443 kb on - strand, within Psyr_0842at 955.443 kb on - strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.459 kb on + strand, within Psyr_0842at 955.460 kb on - strand, within Psyr_0842at 955.460 kb on - strand, within Psyr_0842at 955.483 kb on - strand, within Psyr_0842at 955.483 kb on - strand, within Psyr_0842at 955.493 kb on - strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.513 kb on + strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.514 kb on - strand, within Psyr_0842at 955.609 kb on + strand, within Psyr_0842at 955.610 kb on - strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.666 kb on + strand, within Psyr_0842at 955.667 kb on - strand, within Psyr_0842at 955.667 kb on - strand, within Psyr_0842at 955.667 kb on - strand, within Psyr_0842at 955.695 kb on + strand, within Psyr_0842at 955.695 kb on + strand, within Psyr_0842at 955.696 kb on - strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.793 kb on + strand, within Psyr_0842at 955.794 kb on - strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.795 kb on + strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.796 kb on - strand, within Psyr_0842at 955.837 kb on - strand, within Psyr_0842at 955.852 kb on + strand, within Psyr_0842at 955.853 kb on - strand, within Psyr_0842at 955.853 kb on - strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.859 kb on + strand, within Psyr_0842at 955.860 kb on - strand, within Psyr_0842at 955.860 kb on - strand, within Psyr_0842at 955.860 kb on - strand, within Psyr_0842at 955.860 kb on - strand, within Psyr_0842at 955.860 kb on - strand, within Psyr_0842at 955.897 kb on - strand, within Psyr_0842at 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.158 kb on + strandat 956.159 kb on - strandat 956.160 kb on + strandat 956.255 kb on - strandat 956.255 kb on - strandat 956.255 kb on - strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.279 kb on + strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.280 kb on - strandat 956.482 kb on + strand, within Psyr_0843at 956.482 kb on + strand, within Psyr_0843at 956.483 kb on - strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.526 kb on + strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.527 kb on - strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.631 kb on + strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.632 kb on - strand, within Psyr_0843at 956.829 kb on + strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 956.905 kb on - strand, within Psyr_0843at 957.030 kb on + strandat 957.031 kb on - strandat 957.031 kb on - strandat 957.060 kb on + strand, within Psyr_0844at 957.060 kb on + strand, within Psyr_0844at 957.061 kb on - strand, within Psyr_0844at 957.061 kb on - strand, within Psyr_0844at 957.266 kb on + strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.267 kb on - strand, within Psyr_0844at 957.360 kb on - strandat 957.369 kb on - strandat 957.369 kb on - strandat 957.710 kb on + strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.711 kb on - strand, within Psyr_0845at 957.809 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.814 kb on + strandat 957.924 kb on + strandat 957.924 kb on + strandat 957.956 kb on - strandat 957.956 kb on - strandat 957.987 kb on + strandat 958.004 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
remove
955,351 + Psyr_0842 0.61 +0.7
955,351 + Psyr_0842 0.61 +2.7
955,351 + Psyr_0842 0.61 -1.3
955,351 + Psyr_0842 0.61 +1.4
955,351 + Psyr_0842 0.61 +0.5
955,352 - Psyr_0842 0.61 -0.2
955,352 - Psyr_0842 0.61 +1.3
955,382 - Psyr_0842 0.62 -0.8
955,382 - Psyr_0842 0.62 -1.7
955,382 - Psyr_0842 0.62 -0.4
955,443 - Psyr_0842 0.65 -1.1
955,443 - Psyr_0842 0.65 -1.3
955,459 + Psyr_0842 0.66 +0.7
955,459 + Psyr_0842 0.66 +0.6
955,459 + Psyr_0842 0.66 -2.3
955,459 + Psyr_0842 0.66 -0.6
955,459 + Psyr_0842 0.66 +0.5
955,459 + Psyr_0842 0.66 +1.0
955,459 + Psyr_0842 0.66 -0.3
955,460 - Psyr_0842 0.66 +0.8
955,460 - Psyr_0842 0.66 +0.4
955,483 - Psyr_0842 0.67 +1.2
955,483 - Psyr_0842 0.67 +0.8
955,493 - Psyr_0842 0.67 +0.4
955,513 + Psyr_0842 0.68 +1.7
955,513 + Psyr_0842 0.68 -0.1
955,513 + Psyr_0842 0.68 +1.4
955,513 + Psyr_0842 0.68 +2.1
955,513 + Psyr_0842 0.68 -0.8
955,513 + Psyr_0842 0.68 -1.7
955,513 + Psyr_0842 0.68 +0.5
955,513 + Psyr_0842 0.68 +1.1
955,513 + Psyr_0842 0.68 +0.3
955,513 + Psyr_0842 0.68 -1.2
955,514 - Psyr_0842 0.68 -1.0
955,514 - Psyr_0842 0.68 +1.9
955,514 - Psyr_0842 0.68 -1.5
955,514 - Psyr_0842 0.68 +0.4
955,514 - Psyr_0842 0.68 +2.7
955,514 - Psyr_0842 0.68 +0.4
955,514 - Psyr_0842 0.68 -1.5
955,514 - Psyr_0842 0.68 -1.8
955,514 - Psyr_0842 0.68 -0.6
955,514 - Psyr_0842 0.68 +0.5
955,514 - Psyr_0842 0.68 +3.1
955,514 - Psyr_0842 0.68 +0.4
955,514 - Psyr_0842 0.68 -0.5
955,609 + Psyr_0842 0.72 -1.1
955,610 - Psyr_0842 0.72 -0.7
955,666 + Psyr_0842 0.75 -0.2
955,666 + Psyr_0842 0.75 -1.3
955,666 + Psyr_0842 0.75 -0.6
955,666 + Psyr_0842 0.75 +0.2
955,666 + Psyr_0842 0.75 -0.8
955,666 + Psyr_0842 0.75 -0.8
955,667 - Psyr_0842 0.75 +1.4
955,667 - Psyr_0842 0.75 -1.8
955,667 - Psyr_0842 0.75 -1.4
955,695 + Psyr_0842 0.76 +0.9
955,695 + Psyr_0842 0.76 -0.2
955,696 - Psyr_0842 0.76 -0.3
955,793 + Psyr_0842 0.80 +0.7
955,793 + Psyr_0842 0.80 +0.4
955,793 + Psyr_0842 0.80 -1.1
955,793 + Psyr_0842 0.80 -1.2
955,793 + Psyr_0842 0.80 +1.3
955,793 + Psyr_0842 0.80 -0.8
955,794 - Psyr_0842 0.80 +0.2
955,795 + Psyr_0842 0.80 +1.1
955,795 + Psyr_0842 0.80 -2.4
955,795 + Psyr_0842 0.80 +0.1
955,795 + Psyr_0842 0.80 -0.2
955,795 + Psyr_0842 0.80 -0.1
955,795 + Psyr_0842 0.80 -0.2
955,795 + Psyr_0842 0.80 -1.8
955,795 + Psyr_0842 0.80 +0.7
955,795 + Psyr_0842 0.80 +2.7
955,795 + Psyr_0842 0.80 +1.5
955,795 + Psyr_0842 0.80 +0.2
955,795 + Psyr_0842 0.80 +1.4
955,795 + Psyr_0842 0.80 +0.9
955,795 + Psyr_0842 0.80 -2.7
955,796 - Psyr_0842 0.80 -0.1
955,796 - Psyr_0842 0.80 +0.2
955,796 - Psyr_0842 0.80 +1.7
955,796 - Psyr_0842 0.80 +0.3
955,796 - Psyr_0842 0.80 -0.0
955,796 - Psyr_0842 0.80 -1.1
955,796 - Psyr_0842 0.80 +0.1
955,796 - Psyr_0842 0.80 +1.1
955,796 - Psyr_0842 0.80 +1.7
955,796 - Psyr_0842 0.80 -1.0
955,796 - Psyr_0842 0.80 -0.5
955,796 - Psyr_0842 0.80 +0.1
955,837 - Psyr_0842 0.82 -0.9
955,852 + Psyr_0842 0.83 +1.3
955,853 - Psyr_0842 0.83 +0.7
955,853 - Psyr_0842 0.83 -0.3
955,859 + Psyr_0842 0.83 +0.6
955,859 + Psyr_0842 0.83 -1.9
955,859 + Psyr_0842 0.83 +0.6
955,859 + Psyr_0842 0.83 -0.3
955,859 + Psyr_0842 0.83 +0.2
955,859 + Psyr_0842 0.83 -0.3
955,860 - Psyr_0842 0.83 -0.8
955,860 - Psyr_0842 0.83 +2.5
955,860 - Psyr_0842 0.83 -1.0
955,860 - Psyr_0842 0.83 +0.9
955,860 - Psyr_0842 0.83 +0.4
955,897 - Psyr_0842 0.84 -1.7
956,158 + -0.4
956,158 + +0.7
956,158 + -0.7
956,158 + -0.6
956,158 + -1.8
956,158 + -1.8
956,159 - +0.3
956,160 + -0.5
956,255 - +0.0
956,255 - +0.2
956,255 - +0.7
956,279 + -0.5
956,279 + -0.7
956,279 + +0.1
956,279 + +0.9
956,279 + -0.5
956,279 + -0.2
956,279 + -0.2
956,279 + -0.3
956,280 - -0.9
956,280 - +0.0
956,280 - -1.7
956,280 - +1.0
956,482 + Psyr_0843 0.28 +0.1
956,482 + Psyr_0843 0.28 +0.1
956,483 - Psyr_0843 0.28 +3.2
956,526 + Psyr_0843 0.34 +1.7
956,526 + Psyr_0843 0.34 +0.6
956,526 + Psyr_0843 0.34 -1.8
956,526 + Psyr_0843 0.34 -1.3
956,526 + Psyr_0843 0.34 +1.0
956,526 + Psyr_0843 0.34 +1.7
956,527 - Psyr_0843 0.34 +2.0
956,527 - Psyr_0843 0.34 -0.5
956,527 - Psyr_0843 0.34 +1.2
956,527 - Psyr_0843 0.34 +2.1
956,631 + Psyr_0843 0.48 +0.7
956,631 + Psyr_0843 0.48 -1.1
956,631 + Psyr_0843 0.48 +0.0
956,631 + Psyr_0843 0.48 +0.5
956,631 + Psyr_0843 0.48 +1.2
956,632 - Psyr_0843 0.48 +4.0
956,632 - Psyr_0843 0.48 +0.1
956,632 - Psyr_0843 0.48 -0.3
956,632 - Psyr_0843 0.48 +1.7
956,632 - Psyr_0843 0.48 +0.8
956,829 + Psyr_0843 0.75 -0.5
956,905 - Psyr_0843 0.85 -0.8
956,905 - Psyr_0843 0.85 +1.0
956,905 - Psyr_0843 0.85 +1.7
956,905 - Psyr_0843 0.85 -0.2
956,905 - Psyr_0843 0.85 +0.1
957,030 + +1.3
957,031 - +0.7
957,031 - +0.5
957,060 + Psyr_0844 0.13 +1.7
957,060 + Psyr_0844 0.13 +0.9
957,061 - Psyr_0844 0.13 +0.7
957,061 - Psyr_0844 0.13 -1.5
957,266 + Psyr_0844 0.75 -2.1
957,267 - Psyr_0844 0.76 -1.5
957,267 - Psyr_0844 0.76 +0.8
957,267 - Psyr_0844 0.76 -0.1
957,267 - Psyr_0844 0.76 -0.1
957,360 - +0.1
957,369 - +0.2
957,369 - -1.8
957,710 + Psyr_0845 0.84 +0.5
957,711 - Psyr_0845 0.85 -0.3
957,711 - Psyr_0845 0.85 +0.3
957,711 - Psyr_0845 0.85 -0.7
957,809 + -0.9
957,814 + +0.8
957,814 + +0.5
957,814 + +0.1
957,814 + +0.2
957,814 + +0.4
957,814 + +0.7
957,814 + +0.4
957,924 + -0.7
957,924 + -1.2
957,956 - -0.1
957,956 - +0.7
957,987 + -0.5
958,004 + -0.2

Or see this region's nucleotide sequence