Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0816 and Psyr_0817 are separated by 203 nucleotides Psyr_0817 and Psyr_0818 are separated by 15 nucleotides Psyr_0818 and Psyr_0819 are separated by 35 nucleotides Psyr_0819 and Psyr_0820 are separated by 2 nucleotides
Psyr_0816: Psyr_0816 - conserved hypothetical protein, at 920,739 to 922,994
_0816
Psyr_0817: Psyr_0817 - N-acetylmuramoyl-L-alanine amidase, family 2, at 923,198 to 923,746
_0817
Psyr_0818: Psyr_0818 - ampE protein, at 923,762 to 924,598
_0818
Psyr_0819: Psyr_0819 - TatD-related deoxyribonuclease, at 924,634 to 925,428
_0819
Psyr_0820: Psyr_0820 - transcriptional regulator, LacI family, at 925,431 to 926,426
_0820
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 922.796 kb on + strand at 922.796 kb on + strand at 922.796 kb on + strand at 922.797 kb on - strand at 922.797 kb on - strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.831 kb on - strand at 922.913 kb on - strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 923.031 kb on + strand at 923.031 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.109 kb on - strand at 923.159 kb on - strand at 923.168 kb on + strand at 923.169 kb on - strand at 923.172 kb on + strand at 923.172 kb on + strand at 923.173 kb on - strand at 923.173 kb on - strand at 923.388 kb on - strand, within Psyr_0817 at 923.588 kb on + strand, within Psyr_0817 at 923.589 kb on - strand, within Psyr_0817 at 923.653 kb on + strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.779 kb on - strand at 923.976 kb on - strand, within Psyr_0818 at 924.018 kb on - strand, within Psyr_0818 at 924.171 kb on - strand, within Psyr_0818 at 924.218 kb on + strand, within Psyr_0818 at 924.219 kb on - strand, within Psyr_0818 at 924.226 kb on - strand, within Psyr_0818 at 924.226 kb on - strand, within Psyr_0818 at 924.543 kb on + strand at 924.543 kb on + strand at 924.544 kb on - strand at 924.544 kb on - strand at 924.544 kb on - strand at 924.777 kb on - strand, within Psyr_0819 at 924.923 kb on + strand, within Psyr_0819 at 924.923 kb on + strand, within Psyr_0819 at 924.923 kb on + strand, within Psyr_0819 at 924.924 kb on - strand, within Psyr_0819 at 924.924 kb on - strand, within Psyr_0819 at 925.121 kb on + strand, within Psyr_0819 at 925.121 kb on + strand, within Psyr_0819 at 925.121 kb on + strand, within Psyr_0819 at 925.121 kb on + strand, within Psyr_0819 at 925.121 kb on + strand, within Psyr_0819 at 925.124 kb on + strand, within Psyr_0819 at 925.125 kb on - strand, within Psyr_0819 at 925.125 kb on - strand, within Psyr_0819 at 925.125 kb on - strand, within Psyr_0819 at 925.229 kb on + strand, within Psyr_0819 at 925.310 kb on + strand, within Psyr_0819 at 925.310 kb on + strand, within Psyr_0819 at 925.445 kb on + strand at 925.445 kb on + strand at 925.445 kb on + strand at 925.445 kb on + strand at 925.445 kb on + strand at 925.445 kb on + strand at 925.446 kb on - strand at 925.446 kb on - strand at 925.446 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 922,796 + +0.3 922,796 + -0.5 922,796 + +0.7 922,797 - -1.3 922,797 - +0.5 922,830 + +0.1 922,830 + -1.1 922,830 + -1.0 922,830 + +0.5 922,831 - +0.4 922,913 - -1.5 922,916 + -0.6 922,916 + -0.2 922,916 + -0.5 922,916 + +0.1 922,916 + -0.7 922,916 + -0.1 922,916 + -2.1 922,917 - +0.2 922,917 - +0.8 922,917 - +0.3 922,917 - +0.8 923,031 + +0.0 923,031 + -2.4 923,094 + -1.8 923,094 + -0.8 923,094 + -0.3 923,094 + -0.2 923,094 + +0.8 923,094 + +0.1 923,108 + -0.1 923,108 + -0.1 923,108 + -0.6 923,108 + -1.3 923,108 + +0.7 923,108 + -1.9 923,108 + +0.2 923,109 - -2.6 923,159 - +1.0 923,168 + -0.4 923,169 - +2.8 923,172 + -0.2 923,172 + +0.2 923,173 - -1.3 923,173 - -0.2 923,388 - Psyr_0817 0.35 -0.8 923,588 + Psyr_0817 0.71 +2.7 923,589 - Psyr_0817 0.71 -0.2 923,653 + Psyr_0817 0.83 +0.4 923,654 - Psyr_0817 0.83 -0.9 923,654 - Psyr_0817 0.83 +0.3 923,654 - Psyr_0817 0.83 -0.7 923,654 - Psyr_0817 0.83 -2.4 923,779 - -0.5 923,976 - Psyr_0818 0.26 +0.5 924,018 - Psyr_0818 0.31 +1.5 924,171 - Psyr_0818 0.49 +0.5 924,218 + Psyr_0818 0.54 +0.8 924,219 - Psyr_0818 0.55 -0.8 924,226 - Psyr_0818 0.55 -0.6 924,226 - Psyr_0818 0.55 +0.1 924,543 + -2.2 924,543 + +0.5 924,544 - +1.8 924,544 - -1.4 924,544 - +0.2 924,777 - Psyr_0819 0.18 -0.3 924,923 + Psyr_0819 0.36 -0.5 924,923 + Psyr_0819 0.36 -0.3 924,923 + Psyr_0819 0.36 -0.9 924,924 - Psyr_0819 0.36 -1.6 924,924 - Psyr_0819 0.36 -0.7 925,121 + Psyr_0819 0.61 +0.3 925,121 + Psyr_0819 0.61 -0.7 925,121 + Psyr_0819 0.61 -2.5 925,121 + Psyr_0819 0.61 -1.2 925,121 + Psyr_0819 0.61 -0.9 925,124 + Psyr_0819 0.62 -0.4 925,125 - Psyr_0819 0.62 +1.4 925,125 - Psyr_0819 0.62 -1.9 925,125 - Psyr_0819 0.62 -0.8 925,229 + Psyr_0819 0.75 +0.1 925,310 + Psyr_0819 0.85 +0.8 925,310 + Psyr_0819 0.85 +0.4 925,445 + +1.1 925,445 + +0.7 925,445 + -1.4 925,445 + +0.3 925,445 + -0.7 925,445 + +1.7 925,446 - -1.7 925,446 - +0.4 925,446 - +1.1
Or see this region's nucleotide sequence