Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0744

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
846,481	-				+0.2
846,518	+				-0.8
846,543	+				+2.2
846,545	+				-1.5
846,545	+				-1.2
846,545	+				+2.7
846,545	+				-3.5
846,545	+				-0.8
846,545	+				+1.0
846,545	+				-0.8
846,545	+				-0.6
846,545	+				+1.7
846,546	-				+3.0
846,546	-				+0.4
846,546	-				+0.7
846,546	-				+0.1
846,546	-				+0.7
846,558	-				+1.3
846,566	+				-1.6
846,593	+				-0.7
846,593	+				-1.0
846,593	+				+0.9
846,593	+				-0.1
846,593	+				+0.7
846,593	+				-1.1
846,593	+				-0.1
846,593	+				+1.9
846,594	-				+0.1
846,594	-				-0.8
846,594	-				-0.7
846,594	-				-2.5
846,594	-				+0.8
846,594	-				+1.1
846,594	-				+0.2
846,594	-				-1.1
846,594	-				-1.1
846,595	+				+0.0
846,595	+				+0.5
846,595	+				-0.2
846,596	-				+0.9
846,659	+				-1.1
846,741	-				+0.3
846,754	+				-0.9
846,754	+				+0.8
846,754	+				+4.0
846,754	+				-1.5
846,754	+				-1.1
846,754	+				+0.7
846,754	+				+1.4
846,754	+				+0.6
846,754	+				-0.7
846,754	+				-1.0
846,754	+				-1.3
846,755	-				+1.4
846,755	-				-0.1
846,755	-				+0.1
846,755	-				+0.2
846,755	-				+1.3
846,755	-				-0.2
846,755	-				-0.1
846,755	-				-0.8
846,755	-				+2.7
846,756	+				-1.3
846,756	+				+1.4
846,756	+				-0.7
846,756	+				+0.0
846,756	+				+2.1
846,756	+				-1.0
846,756	+				+0.5
846,756	+				+0.0
846,756	+				-1.2
846,756	+				-0.9
846,756	+				-1.2
846,756	+				+3.5
846,756	+				-0.4
846,756	+				+0.4
846,756	+				-1.5
846,756	+				-1.0
846,757	-				+0.4
846,757	-				+0.9
846,757	-				-1.1
846,757	-				+0.3
846,757	-				+0.7
846,757	-				+0.2
846,757	-				+0.2
846,757	-				-0.6
846,757	-				-0.4
846,757	-				-2.2
846,757	-				-0.8
846,757	-				-1.6
846,757	-				-1.0
846,759	+				-0.2
846,760	-				-1.5
846,760	-				+0.9
846,760	-				-1.7
846,774	+				+0.0
846,774	+				+0.1
846,774	+				-0.0
846,775	-				+0.1
846,775	-				-0.8
846,775	-				+0.0
846,933	-				-0.4
846,981	+				+0.8
846,981	+				-0.1
846,981	+				+0.9
846,981	+				+2.0
846,981	+				-0.5
846,982	-				+1.1
846,982	-				-0.0
846,982	-				+1.0
846,982	-				-0.4
846,982	-				-0.3
846,994	+				+0.7
846,994	+				-0.3
846,994	+				+3.1
846,994	+				+0.9
846,994	+				+3.2
846,994	+				+0.1
846,994	+				-2.1
846,995	-				+3.2
846,995	-				-0.8
847,232	+		Psyr_0743	0.64	+1.0
847,232	+		Psyr_0743	0.64	+0.7
847,232	+		Psyr_0743	0.64	+0.1
847,232	+		Psyr_0743	0.64	-1.3
847,233	-		Psyr_0743	0.65	+1.7
847,233	-		Psyr_0743	0.65	-0.3
847,233	-		Psyr_0743	0.65	-0.0
847,233	-		Psyr_0743	0.65	-1.8
847,233	-		Psyr_0743	0.65	+0.3
847,233	-		Psyr_0743	0.65	+0.7
847,235	+		Psyr_0743	0.65	-0.3
847,236	-		Psyr_0743	0.65	-1.1
847,236	-		Psyr_0743	0.65	-1.3
847,236	-		Psyr_0743	0.65	-0.8
847,370	+				-0.1
847,371	-				-0.8
847,454	-				-1.7
847,468	+				+1.1
847,468	+				+2.7
847,469	-				+0.9
847,469	-				+1.2
847,469	-				+1.7
847,469	-				+1.7
847,585	+		Psyr_0744	0.19	-0.6
847,586	-		Psyr_0744	0.19	-0.3
847,613	+		Psyr_0744	0.23	-0.5
847,613	+		Psyr_0744	0.23	-0.1
847,675	+		Psyr_0744	0.32	-2.2
847,675	+		Psyr_0744	0.32	-2.2
847,675	+		Psyr_0744	0.32	+1.2
847,726	+		Psyr_0744	0.39	-0.7
847,726	+		Psyr_0744	0.39	+1.7
847,726	+		Psyr_0744	0.39	-0.4
847,726	+		Psyr_0744	0.39	-1.1
847,727	-		Psyr_0744	0.39	-0.1
847,727	-		Psyr_0744	0.39	-2.1
847,727	-		Psyr_0744	0.39	+0.0
847,727	-		Psyr_0744	0.39	-0.1
847,727	-		Psyr_0744	0.39	+1.4
847,809	+		Psyr_0744	0.51	-0.0
847,810	-		Psyr_0744	0.51	-1.7
847,810	-		Psyr_0744	0.51	-0.4
847,810	-		Psyr_0744	0.51	-1.3
847,810	-		Psyr_0744	0.51	+0.9
848,084	+				-0.8
848,084	+				-0.5
848,084	+				-1.1
848,084	+				-0.7
848,088	+				+0.5
848,088	+				+0.5
848,088	+				-0.1
848,101	+				-0.2
848,102	-				+0.3
848,133	-				-0.7
848,153	+				+0.9
848,153	+				-1.2
848,153	+				+0.5
848,153	+				+0.1
848,153	+				+1.8
848,153	+				-0.8
848,153	+				-1.0
848,153	+				+0.0
848,153	+				+0.8
848,153	+				+0.9
848,153	+				+2.0
848,154	-		Psyr_0745	0.23	+2.3
848,154	-		Psyr_0745	0.23	+0.5
848,154	-		Psyr_0745	0.23	-1.4
848,154	-		Psyr_0745	0.23	+1.1
848,154	-		Psyr_0745	0.23	-0.7
848,154	-		Psyr_0745	0.23	+0.5
848,154	-		Psyr_0745	0.23	-0.3
848,154	-		Psyr_0745	0.23	-2.2
848,187	-		Psyr_0745	0.29	+0.5
848,501	+		Psyr_0745	0.87	-0.0
848,502	-		Psyr_0745	0.87	-1.0
848,502	-		Psyr_0745	0.87	-0.2
848,502	-		Psyr_0745	0.87	-0.9
848,502	-		Psyr_0745	0.87	-2.7
848,540	-				-0.8
848,661	+				+0.1
848,661	+				+0.4
848,685	+		Psyr_0746	0.15	+0.3
848,686	-		Psyr_0746	0.15	+0.2
848,689	-		Psyr_0746	0.16	-0.1
848,738	+		Psyr_0746	0.29	-0.2
848,738	+		Psyr_0746	0.29	+0.7
848,739	-		Psyr_0746	0.30	+0.6
848,848	+		Psyr_0746	0.59	-1.4
848,849	-		Psyr_0746	0.60	+0.5
849,023	+				-0.9
849,024	-				-0.8
849,024	-				-0.7
849,024	-				-0.7
849,024	-				+0.7
849,079	+		Psyr_0747	0.18	-0.3
849,079	+		Psyr_0747	0.18	-0.7
849,079	+		Psyr_0747	0.18	+0.3
849,080	-		Psyr_0747	0.18	+0.3