Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0733 and Psyr_0734 are separated by 430 nucleotides Psyr_0734 and Psyr_0735 are separated by 363 nucleotides Psyr_0735 and Psyr_0736 overlap by 14 nucleotides
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921
_0735
Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153
_0736
Position (kb) 839
840
841 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.253 kb on - strand at 840.266 kb on + strand at 840.267 kb on - strand at 840.267 kb on - strand at 840.274 kb on + strand at 840.284 kb on - strand at 840.333 kb on - strand at 840.351 kb on - strand at 840.351 kb on - strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.454 kb on + strand at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.892 kb on + strand at 840.938 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 838,689 + Psyr_0733 0.41 +0.5 838,689 + Psyr_0733 0.41 +1.4 838,690 - Psyr_0733 0.41 +0.4 838,690 - Psyr_0733 0.41 +1.7 838,690 - Psyr_0733 0.41 -0.2 838,690 - Psyr_0733 0.41 -0.5 838,690 - Psyr_0733 0.41 +0.5 838,690 - Psyr_0733 0.41 -1.1 838,690 - Psyr_0733 0.41 -0.8 838,699 + Psyr_0733 0.42 +0.3 838,699 + Psyr_0733 0.42 +0.3 838,699 + +3.0 838,699 + Psyr_0733 0.42 -1.2 838,699 + Psyr_0733 0.42 +0.7 838,699 + Psyr_0733 0.42 -0.6 838,700 - Psyr_0733 0.43 +1.4 838,700 - Psyr_0733 0.43 -1.3 838,700 - Psyr_0733 0.43 +1.0 838,700 - Psyr_0733 0.43 +0.3 838,726 - Psyr_0733 0.45 +1.1 838,751 - Psyr_0733 0.48 +0.4 838,751 - Psyr_0733 0.48 -0.4 838,751 - Psyr_0733 0.48 +1.1 838,763 - Psyr_0733 0.49 +0.7 838,830 + Psyr_0733 0.56 +1.7 838,830 + Psyr_0733 0.56 +0.7 838,939 + Psyr_0733 0.68 +1.9 838,939 + Psyr_0733 0.68 +1.4 838,940 - Psyr_0733 0.68 +0.3 838,940 - Psyr_0733 0.68 +0.7 838,940 - Psyr_0733 0.68 +0.3 838,940 - Psyr_0733 0.68 -0.9 838,964 - Psyr_0733 0.70 -0.2 839,005 + Psyr_0733 0.74 -0.9 839,005 + Psyr_0733 0.74 -0.2 839,005 + Psyr_0733 0.74 +0.8 839,005 + Psyr_0733 0.74 +0.6 839,006 - Psyr_0733 0.75 +1.7 839,006 - Psyr_0733 0.75 +0.3 839,077 + Psyr_0733 0.82 +0.5 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 -1.7 839,077 + Psyr_0733 0.82 -0.1 839,077 + Psyr_0733 0.82 +1.7 839,077 + Psyr_0733 0.82 +1.3 839,077 + Psyr_0733 0.82 +1.8 839,077 + Psyr_0733 0.82 +0.7 839,249 + -0.7 839,249 + +1.3 839,250 - +1.0 839,250 - -1.1 839,250 - -1.8 839,250 - +0.3 839,250 - -0.4 839,250 - +0.7 839,252 - -0.6 839,252 - -0.2 839,252 - +0.4 839,252 - +0.1 839,252 - -1.9 839,252 - -0.8 839,252 - +1.7 839,252 - -1.7 839,252 - +1.5 839,252 - -0.3 839,252 - -2.5 839,252 - +0.2 839,252 - +2.2 839,252 - +0.4 839,252 - +0.1 839,291 - -0.7 839,291 - -0.9 839,291 - -0.0 839,291 - +0.4 839,291 - +0.5 839,291 - -0.5 839,291 - +1.4 839,291 - -0.1 839,291 - -0.5 839,291 - -0.1 839,293 - +0.7 839,293 - +1.0 839,319 + -1.0 839,319 + +0.7 839,319 + -0.4 839,319 + +2.9 839,319 + +0.0 839,319 + +0.4 839,319 + +0.3 839,319 + +2.1 839,319 + -3.2 839,319 + -0.1 839,319 + +1.3 839,319 + +0.6 839,319 + -2.2 839,339 + -0.5 839,339 + +2.1 839,340 - +0.7 839,340 - -0.2 839,340 - -0.7 839,341 + +0.2 839,341 + +1.7 839,341 + -0.8 839,341 + -1.6 839,341 + +0.7 839,341 + -0.5 839,341 + -1.1 839,341 + -0.2 839,341 + -1.1 839,342 - -0.9 839,342 - -0.1 839,342 - +0.3 839,342 - +1.3 839,347 + -0.9 839,348 - +0.2 839,348 - -0.6 839,433 - -0.1 839,439 + -2.7 839,439 + +0.7 839,439 + +0.5 839,439 + -2.0 839,444 - -2.4 839,486 + +1.3 839,541 + +0.4 839,541 + +0.2 839,541 + +0.1 839,542 - +0.5 839,599 + -1.8 839,992 - Psyr_0734 0.70 -1.9 839,997 + Psyr_0734 0.71 +1.5 839,998 - Psyr_0734 0.72 -0.3 840,012 - Psyr_0734 0.75 -0.3 840,012 - Psyr_0734 0.75 +1.2 840,012 - Psyr_0734 0.75 +1.1 840,012 - Psyr_0734 0.75 +0.5 840,012 - Psyr_0734 0.75 +0.7 840,252 + -2.9 840,252 + +0.5 840,252 + -1.1 840,252 + +0.2 840,253 - -2.0 840,266 + +1.0 840,267 - -0.9 840,267 - +1.6 840,274 + -1.7 840,284 - +0.9 840,333 - -1.4 840,351 - -1.9 840,351 - -0.3 840,452 + -0.1 840,452 + -0.7 840,452 + -0.7 840,452 + -0.4 840,452 + -1.4 840,454 + -1.7 840,829 - Psyr_0735 0.79 -1.6 840,829 - Psyr_0735 0.79 -4.0 840,829 - Psyr_0735 0.79 -1.1 840,829 - Psyr_0735 0.79 -1.9 840,892 + +0.3 840,938 - Psyr_0736 0.12 +0.5 840,957 - Psyr_0736 0.20 -2.0 840,957 - Psyr_0736 0.20 +0.8 840,957 - Psyr_0736 0.20 -0.7 840,957 - Psyr_0736 0.20 -1.7 840,957 - Psyr_0736 0.20 -0.3 840,957 - Psyr_0736 0.20 -0.8
Or see this region's nucleotide sequence