Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0364 and Psyr_0365 are separated by 49 nucleotides Psyr_0365 and Psyr_0366 overlap by 4 nucleotides Psyr_0366 and Psyr_0367 are separated by 93 nucleotides
Psyr_0364: Psyr_0364 - sodium/proton antiporter, NhaA family, at 388,591 to 389,766
_0364
Psyr_0365: Psyr_0365 - protein of unknown function DUF886, at 389,816 to 390,412
_0365
Psyr_0366: Psyr_0366 - transcriptional regulator, GntR family, at 390,409 to 391,230
_0366
Psyr_0367: Psyr_0367 - formimidoylglutamate deiminase, at 391,324 to 392,688
_0367
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 388.914 kb on + strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.915 kb on - strand, within Psyr_0364 at 388.982 kb on + strand, within Psyr_0364 at 388.983 kb on - strand, within Psyr_0364 at 388.983 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.136 kb on - strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.234 kb on + strand, within Psyr_0364 at 389.235 kb on - strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.423 kb on + strand, within Psyr_0364 at 389.424 kb on - strand, within Psyr_0364 at 389.795 kb on - strand at 389.796 kb on + strand at 389.797 kb on - strand at 389.797 kb on - strand at 389.817 kb on + strand at 389.999 kb on - strand, within Psyr_0365 at 390.038 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.075 kb on + strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.076 kb on - strand, within Psyr_0365 at 390.417 kb on + strand at 390.495 kb on + strand, within Psyr_0366 at 390.495 kb on + strand, within Psyr_0366 at 390.620 kb on + strand, within Psyr_0366 at 390.621 kb on - strand, within Psyr_0366 at 390.621 kb on - strand, within Psyr_0366 at 390.659 kb on + strand, within Psyr_0366 at 390.722 kb on + strand, within Psyr_0366 at 390.976 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.094 kb on + strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.095 kb on - strand, within Psyr_0366 at 391.232 kb on - strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.284 kb on + strand at 391.285 kb on - strand at 391.285 kb on - strand at 391.285 kb on - strand at 391.287 kb on - strand at 391.287 kb on - strand at 391.287 kb on - strand at 391.290 kb on + strand at 391.290 kb on + strand at 391.290 kb on + strand at 391.291 kb on - strand at 391.291 kb on - strand at 391.291 kb on - strand at 391.292 kb on + strand at 391.293 kb on - strand at 391.294 kb on + strand at 391.301 kb on + strand at 391.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 388,914 + Psyr_0364 0.27 -1.3 388,915 - Psyr_0364 0.28 -1.7 388,915 - Psyr_0364 0.28 +1.0 388,915 - Psyr_0364 0.28 -0.4 388,982 + Psyr_0364 0.33 +1.2 388,983 - Psyr_0364 0.33 -0.8 388,983 - Psyr_0364 0.33 -1.8 389,136 - Psyr_0364 0.46 -1.5 389,136 - Psyr_0364 0.46 +0.6 389,136 - Psyr_0364 0.46 -1.1 389,234 + Psyr_0364 0.55 +1.1 389,234 + Psyr_0364 0.55 -1.1 389,234 + Psyr_0364 0.55 +0.0 389,235 - Psyr_0364 0.55 -1.6 389,423 + Psyr_0364 0.71 -0.6 389,423 + Psyr_0364 0.71 +0.5 389,423 + Psyr_0364 0.71 +0.2 389,423 + Psyr_0364 0.71 -0.1 389,424 - Psyr_0364 0.71 +0.9 389,795 - +0.9 389,796 + -2.5 389,797 - -0.5 389,797 - +0.4 389,817 + -0.7 389,999 - Psyr_0365 0.31 +0.1 390,038 + Psyr_0365 0.37 +0.3 390,075 + Psyr_0365 0.43 -0.4 390,075 + Psyr_0365 0.43 +0.3 390,075 + Psyr_0365 0.43 +1.0 390,076 - Psyr_0365 0.44 +0.9 390,076 - Psyr_0365 0.44 -0.1 390,076 - Psyr_0365 0.44 -0.3 390,076 - Psyr_0365 0.44 +0.9 390,076 - Psyr_0365 0.44 +0.2 390,417 + -0.3 390,495 + Psyr_0366 0.10 +0.5 390,495 + Psyr_0366 0.10 -1.0 390,620 + Psyr_0366 0.26 +0.8 390,621 - Psyr_0366 0.26 -1.4 390,621 - Psyr_0366 0.26 +1.1 390,659 + Psyr_0366 0.30 -0.7 390,722 + Psyr_0366 0.38 -0.2 390,976 + Psyr_0366 0.69 +0.1 391,094 + Psyr_0366 0.83 -1.2 391,094 + Psyr_0366 0.83 -1.5 391,094 + Psyr_0366 0.83 -0.9 391,095 - Psyr_0366 0.83 +0.9 391,095 - Psyr_0366 0.83 -0.2 391,095 - Psyr_0366 0.83 +0.2 391,232 - -0.4 391,284 + -0.7 391,284 + +0.3 391,284 + -0.7 391,284 + +1.0 391,284 + -0.2 391,285 - +0.1 391,285 - +0.4 391,285 - +1.6 391,287 - -0.9 391,287 - +1.6 391,287 - +0.8 391,290 + +0.6 391,290 + +0.7 391,290 + +1.4 391,291 - +0.4 391,291 - -0.9 391,291 - +0.5 391,292 + -0.5 391,293 - +3.8 391,294 + -0.5 391,301 + -0.7 391,352 + -0.4
Or see this region's nucleotide sequence