Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0118 and Psyr_0119 are separated by 84 nucleotides Psyr_0119 and Psyr_0120 are separated by 343 nucleotides Psyr_0120 and Psyr_0121 are separated by 81 nucleotides Psyr_0121 and Psyr_0122 are separated by 89 nucleotides
Psyr_0118: Psyr_0118 - hypothetical protein, at 128,434 to 129,486
_0118
Psyr_0119: Psyr_0119 - CDS, at 129,571 to 129,822
_0119
Psyr_0120: Psyr_0120 - Short-chain dehydrogenase/reductase SDR, at 130,166 to 130,936
_0120
Psyr_0121: Psyr_0121 - transcriptional regulator, TetR family, at 131,018 to 131,647
_0121
Psyr_0122: Psyr_0122 - NAD(P)H dehydrogenase (quinone), at 131,737 to 132,393
_0122
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.176 kb on + strand, within Psyr_0118 at 129.176 kb on + strand, within Psyr_0118 at 129.176 kb on + strand, within Psyr_0118 at 129.176 kb on + strand, within Psyr_0118 at 129.176 kb on + strand, within Psyr_0118 at 129.177 kb on - strand, within Psyr_0118 at 129.177 kb on - strand, within Psyr_0118 at 129.232 kb on + strand, within Psyr_0118 at 129.267 kb on - strand, within Psyr_0118 at 129.283 kb on + strand, within Psyr_0118 at 129.283 kb on + strand, within Psyr_0118 at 129.284 kb on - strand, within Psyr_0118 at 129.284 kb on - strand, within Psyr_0118 at 129.384 kb on - strand at 129.392 kb on - strand at 129.394 kb on - strand at 129.433 kb on + strand at 129.433 kb on + strand at 129.433 kb on + strand at 129.433 kb on + strand at 129.433 kb on + strand at 129.434 kb on - strand at 129.623 kb on + strand, within Psyr_0119 at 129.623 kb on + strand, within Psyr_0119 at 129.623 kb on + strand, within Psyr_0119 at 129.624 kb on - strand, within Psyr_0119 at 129.624 kb on - strand, within Psyr_0119 at 129.640 kb on + strand, within Psyr_0119 at 129.640 kb on + strand, within Psyr_0119 at 129.716 kb on - strand, within Psyr_0119 at 129.743 kb on + strand, within Psyr_0119 at 129.847 kb on + strand at 129.847 kb on + strand at 129.858 kb on + strand at 129.937 kb on + strand at 129.937 kb on + strand at 129.937 kb on + strand at 129.937 kb on + strand at 129.937 kb on + strand at 129.940 kb on - strand at 129.955 kb on + strand at 129.956 kb on - strand at 130.000 kb on + strand at 130.000 kb on + strand at 130.000 kb on + strand at 130.000 kb on + strand at 130.003 kb on - strand at 130.003 kb on - strand at 130.058 kb on + strand at 130.059 kb on - strand at 130.110 kb on + strand at 130.110 kb on + strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.111 kb on - strand at 130.165 kb on + strand at 130.166 kb on - strand at 130.228 kb on + strand at 130.229 kb on - strand at 130.451 kb on - strand, within Psyr_0120 at 130.455 kb on + strand, within Psyr_0120 at 130.455 kb on + strand, within Psyr_0120 at 130.456 kb on - strand, within Psyr_0120 at 130.456 kb on - strand, within Psyr_0120 at 130.456 kb on - strand, within Psyr_0120 at 130.456 kb on - strand, within Psyr_0120 at 130.459 kb on + strand, within Psyr_0120 at 130.459 kb on + strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.460 kb on - strand, within Psyr_0120 at 130.575 kb on + strand, within Psyr_0120 at 130.575 kb on + strand, within Psyr_0120 at 130.575 kb on + strand, within Psyr_0120 at 130.575 kb on + strand, within Psyr_0120 at 130.575 kb on + strand, within Psyr_0120 at 130.576 kb on - strand, within Psyr_0120 at 130.576 kb on - strand, within Psyr_0120 at 130.670 kb on + strand, within Psyr_0120 at 130.670 kb on + strand, within Psyr_0120 at 130.670 kb on + strand, within Psyr_0120 at 130.670 kb on + strand, within Psyr_0120 at 130.671 kb on - strand, within Psyr_0120 at 130.747 kb on + strand, within Psyr_0120 at 130.748 kb on - strand, within Psyr_0120 at 130.748 kb on - strand, within Psyr_0120 at 130.748 kb on - strand, within Psyr_0120 at 130.761 kb on + strand, within Psyr_0120 at 130.761 kb on + strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.762 kb on - strand, within Psyr_0120 at 130.869 kb on + strand at 130.869 kb on + strand at 130.870 kb on - strand at 130.967 kb on + strand at 130.967 kb on + strand at 130.968 kb on - strand at 130.968 kb on - strand at 130.968 kb on - strand at 130.968 kb on - strand at 131.147 kb on + strand, within Psyr_0121 at 131.147 kb on + strand, within Psyr_0121 at 131.147 kb on + strand, within Psyr_0121 at 131.147 kb on + strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.148 kb on - strand, within Psyr_0121 at 131.221 kb on + strand, within Psyr_0121 at 131.230 kb on + strand, within Psyr_0121 at 131.287 kb on + strand, within Psyr_0121 at 131.297 kb on + strand, within Psyr_0121 at 131.298 kb on - strand, within Psyr_0121 at 131.319 kb on - strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.331 kb on + strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.332 kb on - strand, within Psyr_0121 at 131.343 kb on - strand, within Psyr_0121 at 131.343 kb on - strand, within Psyr_0121 at 131.430 kb on + strand, within Psyr_0121 at 131.431 kb on - strand, within Psyr_0121 at 131.431 kb on - strand, within Psyr_0121 at 131.431 kb on - strand, within Psyr_0121 at 131.459 kb on - strand, within Psyr_0121 at 131.635 kb on + strand at 131.651 kb on + strand at 131.652 kb on - strand at 131.652 kb on - strand at 131.655 kb on + strand at 131.656 kb on - strand at 131.661 kb on + strand at 131.665 kb on - strand at 131.691 kb on + strand at 131.694 kb on - strand at 131.735 kb on + strand at 131.736 kb on - strand at 131.814 kb on + strand, within Psyr_0122 at 131.815 kb on - strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.819 kb on + strand, within Psyr_0122 at 131.820 kb on - strand, within Psyr_0122 at 131.820 kb on - strand, within Psyr_0122 at 131.820 kb on - strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.822 kb on + strand, within Psyr_0122 at 131.823 kb on - strand, within Psyr_0122 at 131.823 kb on - strand, within Psyr_0122 at 131.823 kb on - strand, within Psyr_0122 at 131.823 kb on - strand, within Psyr_0122 at 131.844 kb on - strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.906 kb on + strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122 at 131.907 kb on - strand, within Psyr_0122
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 129,176 + Psyr_0118 0.70 -0.4 129,176 + Psyr_0118 0.70 +0.7 129,176 + Psyr_0118 0.70 -0.6 129,176 + Psyr_0118 0.70 +0.8 129,176 + Psyr_0118 0.70 +3.0 129,177 - Psyr_0118 0.71 +0.2 129,177 - Psyr_0118 0.71 +0.1 129,232 + Psyr_0118 0.76 -0.3 129,267 - Psyr_0118 0.79 -0.0 129,283 + Psyr_0118 0.81 +0.6 129,283 + Psyr_0118 0.81 +0.9 129,284 - Psyr_0118 0.81 -0.5 129,284 - Psyr_0118 0.81 -0.8 129,384 - -0.2 129,392 - +0.9 129,394 - +0.8 129,433 + +0.2 129,433 + -0.2 129,433 + +0.5 129,433 + -0.3 129,433 + -0.6 129,434 - -0.7 129,623 + Psyr_0119 0.21 -1.2 129,623 + Psyr_0119 0.21 -0.6 129,623 + Psyr_0119 0.21 -0.3 129,624 - Psyr_0119 0.21 -0.3 129,624 - Psyr_0119 0.21 -0.6 129,640 + Psyr_0119 0.27 +1.8 129,640 + Psyr_0119 0.27 -0.5 129,716 - Psyr_0119 0.58 +2.2 129,743 + Psyr_0119 0.68 +0.0 129,847 + -2.6 129,847 + +0.6 129,858 + +0.2 129,937 + -0.6 129,937 + -1.6 129,937 + +0.8 129,937 + -2.2 129,937 + -0.7 129,940 - -0.3 129,955 + +1.4 129,956 - -0.6 130,000 + -1.6 130,000 + -0.0 130,000 + +1.8 130,000 + -0.1 130,003 - -2.2 130,003 - -0.0 130,058 + -0.1 130,059 - -0.2 130,110 + +0.6 130,110 + +0.3 130,111 - -0.3 130,111 - +0.4 130,111 - -1.9 130,111 - +1.2 130,111 - +1.7 130,165 + -0.0 130,166 - +0.2 130,228 + -1.1 130,229 - +0.3 130,451 - Psyr_0120 0.37 +0.4 130,455 + Psyr_0120 0.37 +1.0 130,455 + Psyr_0120 0.37 +0.3 130,456 - Psyr_0120 0.38 +0.8 130,456 - Psyr_0120 0.38 -0.1 130,456 - Psyr_0120 0.38 -0.8 130,456 - Psyr_0120 0.38 +0.5 130,459 + Psyr_0120 0.38 +0.3 130,459 + Psyr_0120 0.38 +1.0 130,460 - Psyr_0120 0.38 -0.8 130,460 - Psyr_0120 0.38 +0.7 130,460 - Psyr_0120 0.38 -0.6 130,460 - Psyr_0120 0.38 +0.3 130,460 - Psyr_0120 0.38 -0.6 130,460 - Psyr_0120 0.38 -0.3 130,575 + Psyr_0120 0.53 +0.3 130,575 + Psyr_0120 0.53 -0.5 130,575 + Psyr_0120 0.53 -1.3 130,575 + Psyr_0120 0.53 +0.6 130,575 + Psyr_0120 0.53 -1.6 130,576 - Psyr_0120 0.53 +0.6 130,576 - Psyr_0120 0.53 +0.4 130,670 + Psyr_0120 0.65 -1.1 130,670 + Psyr_0120 0.65 +1.0 130,670 + Psyr_0120 0.65 +1.3 130,670 + Psyr_0120 0.65 -1.8 130,671 - Psyr_0120 0.65 +1.1 130,747 + Psyr_0120 0.75 -0.3 130,748 - Psyr_0120 0.75 +0.6 130,748 - Psyr_0120 0.75 -0.8 130,748 - Psyr_0120 0.75 -0.2 130,761 + Psyr_0120 0.77 -1.1 130,761 + Psyr_0120 0.77 +0.4 130,762 - Psyr_0120 0.77 +1.1 130,762 - Psyr_0120 0.77 +0.2 130,762 - Psyr_0120 0.77 +1.1 130,762 - Psyr_0120 0.77 -0.1 130,762 - Psyr_0120 0.77 -0.3 130,762 - Psyr_0120 0.77 +0.1 130,762 - Psyr_0120 0.77 -1.8 130,762 - Psyr_0120 0.77 -0.0 130,762 - Psyr_0120 0.77 +0.1 130,762 - Psyr_0120 0.77 -1.8 130,869 + +0.7 130,869 + -0.6 130,870 - -0.2 130,967 + +0.7 130,967 + +3.0 130,968 - -1.7 130,968 - -0.9 130,968 - +0.4 130,968 - -0.2 131,147 + Psyr_0121 0.20 -0.5 131,147 + Psyr_0121 0.20 +1.1 131,147 + Psyr_0121 0.20 +0.1 131,147 + Psyr_0121 0.20 +1.8 131,148 - Psyr_0121 0.21 +0.1 131,148 - Psyr_0121 0.21 +2.4 131,148 - Psyr_0121 0.21 -0.6 131,148 - Psyr_0121 0.21 +0.3 131,148 - Psyr_0121 0.21 +0.7 131,148 - Psyr_0121 0.21 +2.1 131,148 - Psyr_0121 0.21 -0.9 131,221 + Psyr_0121 0.32 -1.0 131,230 + Psyr_0121 0.34 -0.3 131,287 + Psyr_0121 0.43 -1.0 131,297 + Psyr_0121 0.44 +0.8 131,298 - Psyr_0121 0.44 -0.6 131,319 - Psyr_0121 0.48 -0.7 131,331 + Psyr_0121 0.50 +1.3 131,331 + Psyr_0121 0.50 -0.8 131,331 + Psyr_0121 0.50 -0.3 131,331 + Psyr_0121 0.50 -0.2 131,331 + Psyr_0121 0.50 +0.7 131,331 + Psyr_0121 0.50 -1.3 131,331 + Psyr_0121 0.50 +0.6 131,331 + Psyr_0121 0.50 -2.3 131,331 + Psyr_0121 0.50 -1.0 131,331 + Psyr_0121 0.50 -1.1 131,331 + Psyr_0121 0.50 +0.2 131,332 - Psyr_0121 0.50 -0.6 131,332 - Psyr_0121 0.50 -0.8 131,332 - Psyr_0121 0.50 +1.2 131,332 - Psyr_0121 0.50 -0.9 131,332 - Psyr_0121 0.50 -1.0 131,332 - Psyr_0121 0.50 +0.6 131,332 - Psyr_0121 0.50 -1.3 131,332 - Psyr_0121 0.50 -1.1 131,343 - Psyr_0121 0.52 +3.6 131,343 - Psyr_0121 0.52 -0.3 131,430 + Psyr_0121 0.65 +0.2 131,431 - Psyr_0121 0.66 +1.1 131,431 - Psyr_0121 0.66 -0.4 131,431 - Psyr_0121 0.66 +0.9 131,459 - Psyr_0121 0.70 -1.0 131,635 + -0.5 131,651 + -0.0 131,652 - -1.5 131,652 - -0.0 131,655 + -0.8 131,656 - +0.6 131,661 + +1.1 131,665 - -1.5 131,691 + -2.0 131,694 - +0.3 131,735 + -0.5 131,736 - +0.6 131,814 + Psyr_0122 0.12 -0.3 131,815 - Psyr_0122 0.12 +0.2 131,819 + Psyr_0122 0.12 -1.5 131,819 + Psyr_0122 0.12 -0.4 131,819 + Psyr_0122 0.12 -0.8 131,819 + Psyr_0122 0.12 -0.3 131,819 + Psyr_0122 0.12 +0.3 131,819 + Psyr_0122 0.12 -0.4 131,820 - Psyr_0122 0.13 +0.8 131,820 - Psyr_0122 0.13 -0.5 131,820 - Psyr_0122 0.13 +0.6 131,822 + Psyr_0122 0.13 -2.2 131,822 + Psyr_0122 0.13 -0.8 131,822 + Psyr_0122 0.13 +2.0 131,822 + Psyr_0122 0.13 +1.2 131,822 + Psyr_0122 0.13 -1.0 131,822 + Psyr_0122 0.13 -0.3 131,823 - Psyr_0122 0.13 -0.6 131,823 - Psyr_0122 0.13 +1.6 131,823 - Psyr_0122 0.13 -2.5 131,823 - Psyr_0122 0.13 +2.2 131,844 - Psyr_0122 0.16 -0.5 131,906 + Psyr_0122 0.26 +1.6 131,906 + Psyr_0122 0.26 +1.0 131,906 + Psyr_0122 0.26 +2.7 131,906 + Psyr_0122 0.26 -1.6 131,906 + Psyr_0122 0.26 -0.1 131,906 + Psyr_0122 0.26 -1.2 131,906 + Psyr_0122 0.26 -1.8 131,906 + Psyr_0122 0.26 +0.2 131,906 + Psyr_0122 0.26 -1.2 131,906 + Psyr_0122 0.26 -0.0 131,907 - Psyr_0122 0.26 -0.2 131,907 - Psyr_0122 0.26 +0.9 131,907 - Psyr_0122 0.26 +0.1 131,907 - Psyr_0122 0.26 +0.8 131,907 - Psyr_0122 0.26 +0.9 131,907 - Psyr_0122 0.26 +0.3 131,907 - Psyr_0122 0.26 -0.2 131,907 - Psyr_0122 0.26 -0.2 131,907 - Psyr_0122 0.26 +0.0 131,907 - Psyr_0122 0.26 -1.3
Or see this region's nucleotide sequence