Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0086

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
90,927	+		Psyr_0084	0.65	-0.4
90,927	+		Psyr_0084	0.65	+3.0
90,928	-		Psyr_0084	0.65	+0.9
90,928	-		Psyr_0084	0.65	-0.7
90,928	-		Psyr_0084	0.65	+1.0
90,928	-		Psyr_0084	0.65	+0.3
90,928	-		Psyr_0084	0.65	+0.4
90,928	-		Psyr_0084	0.65	-0.6
91,152	+		Psyr_0084	0.88	+2.0
91,152	+		Psyr_0084	0.88	-0.2
91,152	+		Psyr_0084	0.88	-0.2
91,152	+		Psyr_0084	0.88	-1.7
91,152	+		Psyr_0084	0.88	-0.5
91,152	+		Psyr_0084	0.88	-0.6
91,153	-		Psyr_0084	0.88	+0.5
91,161	+		Psyr_0084	0.89	+1.2
91,161	+		Psyr_0084	0.89	-1.0
91,162	-		Psyr_0084	0.89	+0.5
91,162	-		Psyr_0084	0.89	+1.6
91,183	-				-0.6
91,183	-				-0.3
91,183	-				-0.2
91,183	-				+0.0
91,276	+				-0.8
91,276	+				-2.0
91,276	+				-1.4
91,276	+				-1.3
91,276	+				-1.3
91,276	+				-1.7
91,276	+				-0.4
91,276	+				-0.0
91,276	+				+0.7
91,276	+				+0.8
91,276	+				+3.1
91,276	+				-0.2
91,276	+				+0.1
91,277	-				+1.5
91,277	-				+1.3
91,277	-				+0.4
91,277	-				-0.2
91,277	-				-0.8
91,277	-				+2.0
91,277	-				+2.0
91,277	-				+0.7
91,277	-				-0.7
91,277	-				-0.0
91,277	-				+0.3
91,277	-				-0.3
91,296	+				+0.8
91,296	+				-0.6
91,296	+				-0.4
91,296	+				-1.7
91,296	+				-1.0
91,297	-				-0.6
91,297	-				-0.3
91,589	+		Psyr_0085	0.89	-0.0
91,589	+		Psyr_0085	0.89	+1.0
91,589	+		Psyr_0085	0.89	-0.5
91,589	+		Psyr_0085	0.89	-1.1
91,589	+		Psyr_0085	0.89	+0.1
91,589	+		Psyr_0085	0.89	+1.0
91,589	+		Psyr_0085	0.89	+0.5
91,589	+		Psyr_0085	0.89	-1.8
91,589	+		Psyr_0085	0.89	-0.5
91,589	+		Psyr_0085	0.89	+2.0
91,590	-				-1.1
91,590	-				-0.7
91,590	-				+0.5
91,593	+				-1.4
91,593	+				-1.3
91,593	+				-0.7
91,593	+				-2.6
91,593	+				+1.7
91,593	+				+1.5
91,594	-				+0.3
91,594	-				+1.0
91,594	-				+0.6
91,594	-				+1.0
91,594	-				+0.4
91,613	+				+0.7
91,613	+				-2.2
91,614	-				+1.0
91,614	-				-0.1
91,614	-				+0.9
91,614	-				-0.5
91,662	+				+3.0
91,678	+				+0.9
91,681	+				-1.6
91,681	+				+0.1
91,682	-				+1.0
91,682	-				+0.4
91,682	-				-0.0
91,682	-				-0.1
91,682	-				+0.7
91,682	-				-0.4
91,682	-				+0.2
91,682	-				-0.5
91,809	+				-0.1
91,809	+				+1.0
91,809	+				-0.8
91,809	+				-0.2
91,809	+				-2.7
91,809	+				-0.1
91,809	+				-0.8
91,810	-				+0.9
91,810	-				+0.4
91,810	-				+0.7
91,810	-				+0.4
91,810	-				-0.1
91,810	-				-0.1
91,902	-				+0.3
91,902	-				+0.8
92,485	+		Psyr_0086	0.35	-0.4
92,485	+		Psyr_0086	0.35	+3.6
92,505	+		Psyr_0086	0.36	-0.5
92,517	+		Psyr_0086	0.37	+0.9
92,517	+		Psyr_0086	0.37	-0.8
92,518	-		Psyr_0086	0.37	-1.5
92,518	-		Psyr_0086	0.37	-1.6
92,821	+		Psyr_0086	0.53	-0.7
92,821	+		Psyr_0086	0.53	-2.0
92,822	-		Psyr_0086	0.53	-0.8
92,822	-		Psyr_0086	0.53	-1.4
92,822	-		Psyr_0086	0.53	+0.6
93,088	-		Psyr_0086	0.67	-1.0
93,088	-		Psyr_0086	0.67	+2.3
93,088	-		Psyr_0086	0.67	-0.0
93,214	-		Psyr_0086	0.73	-1.5
93,282	+		Psyr_0086	0.77	-1.3
93,282	+		Psyr_0086	0.77	+1.5
93,282	+		Psyr_0086	0.77	-0.7
93,282	+		Psyr_0086	0.77	+0.5
93,282	+		Psyr_0086	0.77	+0.4
93,282	+		Psyr_0086	0.77	-2.2
93,282	+		Psyr_0086	0.77	-0.4
93,282	+		Psyr_0086	0.77	-0.0
93,282	+		Psyr_0086	0.77	-0.2
93,282	+		Psyr_0086	0.77	-1.0
93,283	-		Psyr_0086	0.77	-1.4
93,283	-		Psyr_0086	0.77	-1.3
93,283	-		Psyr_0086	0.77	-1.1
93,283	-		Psyr_0086	0.77	-2.6
93,283	-		Psyr_0086	0.77	+1.8
93,283	-		Psyr_0086	0.77	-0.2
93,283	-		Psyr_0086	0.77	-1.7
93,392	+		Psyr_0086	0.82	-0.6
93,392	+		Psyr_0086	0.82	-0.0
93,392	+		Psyr_0086	0.82	+0.8
93,392	+		Psyr_0086	0.82	-1.2
93,392	+		Psyr_0086	0.82	-1.0
93,392	+		Psyr_0086	0.82	-0.3
93,392	+		Psyr_0086	0.82	-0.8
93,393	-		Psyr_0086	0.83	-1.8
93,393	-		Psyr_0086	0.83	+0.8
93,393	-		Psyr_0086	0.83	-0.4
93,480	+		Psyr_0086	0.87	-0.5
93,480	+		Psyr_0086	0.87	-1.5
93,480	+		Psyr_0086	0.87	-0.3
93,480	+		Psyr_0086	0.87	+1.0
93,480	+		Psyr_0086	0.87	+1.3
93,481	-		Psyr_0086	0.87	+4.0
93,481	-		Psyr_0086	0.87	+0.4
93,481	-		Psyr_0086	0.87	+0.6
93,481	-		Psyr_0086	0.87	-0.5
93,548	-				-1.0
93,677	+				+0.2
93,677	+				+0.1
93,678	-				+0.3
93,678	-				+0.2
93,678	-				+0.7
93,684	+				+0.7
93,727	+				-0.0
93,728	-				+2.0
93,728	-				-0.3
93,758	+				-1.9
93,759	-				+0.3
93,759	-				+0.9
93,760	+				-0.1
93,760	+				+0.1
93,760	+				-0.4
93,760	+				+0.1
93,761	-				+1.6
93,761	-				-0.3
93,786	+				-2.1
93,786	+				+0.1
93,786	+				+0.0
93,786	+				+0.3
93,786	+				+0.7
93,786	+				+0.6
93,786	+				+0.8
93,786	+				-0.6
93,787	-				+0.8
93,787	-				+0.4
93,787	-				-1.8
93,787	-				-0.1
93,787	-				-0.4
93,787	-				+0.3
93,787	-				+0.3
93,787	-				+0.7
93,787	-				-0.7
93,787	-				-0.2
93,787	-				-1.5
93,787	-				+0.2
93,826	+				+0.5
93,827	-				-1.2
93,827	-				+0.0
93,861	+				-1.0
93,879	+				-2.1
93,879	+				-0.4
93,879	+				-0.2
93,879	+				+0.7
93,879	+				+0.1
93,879	+				-0.7
93,879	+				+1.0
93,879	+				+0.3
93,879	+				-0.9
93,880	-				-1.0
93,880	-				-1.1
93,880	-				-0.2
93,880	-				+1.2
93,880	-				-1.3
93,880	-				-0.6
93,886	+				-1.3
93,886	+				+3.2
93,886	+				+0.3
93,886	+				-0.2
93,887	-				-0.0
93,887	-				+0.9
93,887	-				-1.8
93,887	-				-0.3
93,920	+				+1.4
93,920	+				-2.1
93,921	-				-1.3
93,921	-				-0.7
93,948	+				+1.0
93,949	-				+1.2
93,949	-				+3.2
93,949	-				-0.1
93,949	-				-1.0
93,949	-				+0.8
93,949	-				+1.0
93,949	-				-1.6
93,949	-				+0.1
93,949	-				-1.9
93,950	+				-1.0
93,950	+				-2.3
93,950	+				-1.2
93,951	-				-1.6
93,951	-				-0.1
93,951	-				+1.0
93,951	-				+0.8
93,951	-				-3.2
93,951	-				+2.6
93,951	-				-1.9
93,973	+				-0.6
93,973	+				-1.3
93,974	-				-1.0
93,974	-				+0.2
94,221	+		Psyr_0087	0.29	+4.0
94,222	-		Psyr_0087	0.29	-1.2
94,222	-		Psyr_0087	0.29	+0.1
94,225	+		Psyr_0087	0.29	+0.1
94,226	-		Psyr_0087	0.29	-1.8
94,226	-		Psyr_0087	0.29	+1.6
94,267	+		Psyr_0087	0.33	+0.2
94,267	+		Psyr_0087	0.33	-0.8
94,513	+		Psyr_0087	0.53	-0.2
94,514	-		Psyr_0087	0.54	+0.0
94,623	+		Psyr_0087	0.63	-0.0
94,623	+		Psyr_0087	0.63	-0.0