Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0077

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
81,851	+		Psyr_0076	0.51	+0.3
81,851	+		Psyr_0076	0.51	-0.2
81,851	+		Psyr_0076	0.51	-0.8
81,852	-		Psyr_0076	0.51	+0.3
81,852	-		Psyr_0076	0.51	-0.5
81,852	-		Psyr_0076	0.51	+0.7
82,130	+				+0.2
82,130	+				-0.6
82,130	+				-0.0
82,130	+				+1.0
82,130	+				+0.2
82,131	-				-0.3
82,131	-				-1.7
82,131	-				-0.4
82,131	-				-0.6
82,192	+				-1.0
82,193	-				+1.3
82,193	-				-0.8
82,193	-				+1.0
82,421	+				-1.2
82,421	+				-0.6
82,425	+				-0.5
82,425	+				-2.7
82,425	+				+0.2
82,425	+				-1.2
82,425	+				-0.9
82,425	+				+0.1
82,426	-				-1.1
82,426	-				+0.2
82,426	-				-0.9
82,426	-				+0.1
82,426	-				-1.2
82,535	+				+2.0
82,649	+				+1.0
82,649	+				-1.2
82,649	+				-0.9
82,711	+				-0.2
82,867	-		Psyr_0077	0.11	-0.9
82,898	+		Psyr_0077	0.13	-1.6
82,942	+		Psyr_0077	0.17	+0.4
82,946	+		Psyr_0077	0.17	-1.5
82,947	-		Psyr_0077	0.17	+0.3
82,947	-		Psyr_0077	0.17	-0.0
82,947	-		Psyr_0077	0.17	-0.9
82,947	-		Psyr_0077	0.17	-0.8
82,964	+		Psyr_0077	0.18	+0.6
82,964	+		Psyr_0077	0.18	-1.1
82,964	+		Psyr_0077	0.18	+0.7
82,965	-		Psyr_0077	0.18	+0.4
82,965	-		Psyr_0077	0.18	-2.0
82,965	-		Psyr_0077	0.18	+0.6
82,965	-		Psyr_0077	0.18	-0.1
82,965	-		Psyr_0077	0.18	+1.0
82,965	-		Psyr_0077	0.18	-0.1
82,965	-		Psyr_0077	0.18	+2.0
82,965	-		Psyr_0077	0.18	-0.1
83,001	+		Psyr_0077	0.21	-0.8
83,001	+		Psyr_0077	0.21	+1.2
83,002	-		Psyr_0077	0.21	-0.7
83,002	-		Psyr_0077	0.21	+0.6
83,148	+		Psyr_0077	0.32	+0.2
83,149	-		Psyr_0077	0.32	+0.3
83,149	-		Psyr_0077	0.32	-0.8
83,201	-		Psyr_0077	0.36	-0.8
83,682	+		Psyr_0077	0.73	-0.8
83,682	+		Psyr_0077	0.73	-2.3
83,682	+		Psyr_0077	0.73	-0.4
83,682	+		Psyr_0077	0.73	-1.8
83,943	+				-0.5
83,943	+				+0.0
83,944	-				-1.1
83,988	+				+1.3
83,989	-				+1.6
84,190	-				+0.4
84,316	-				-3.6
84,357	+				+2.1
84,357	+				+0.7
84,357	+				-1.0
84,357	+				-0.3
84,358	-				-0.7
84,358	-				-1.0
84,358	-				+0.4
84,358	-				-1.8
84,358	-				+0.5
84,358	-				-2.3
84,373	+				+0.1
84,374	-				-1.1
84,374	-				+0.2
84,431	-		Psyr_0078	0.14	-0.0
84,431	-		Psyr_0078	0.14	+0.2
84,431	-		Psyr_0078	0.14	-0.4
84,949	+		Psyr_0078	0.72	+0.0
84,949	+		Psyr_0078	0.72	-2.0
84,949	+		Psyr_0078	0.72	+2.0
84,950	-				+1.0
84,976	+		Psyr_0078	0.75	+0.7
84,976	+		Psyr_0078	0.75	-0.0
84,976	+		Psyr_0078	0.75	+1.0
84,976	+		Psyr_0078	0.75	+1.0
84,976	+		Psyr_0078	0.75	-1.2
84,976	+		Psyr_0078	0.75	+1.2
84,977	-		Psyr_0078	0.75	+0.1
84,977	-		Psyr_0078	0.75	+1.2
84,977	-		Psyr_0078	0.75	+0.1
84,977	-		Psyr_0078	0.75	-1.7
84,977	-		Psyr_0078	0.75	+1.7
84,977	-		Psyr_0078	0.75	-1.1
84,977	-		Psyr_0078	0.75	-0.4