Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0069 and Psyr_0070 are separated by 199 nucleotides Psyr_0070 and Psyr_0071 overlap by 65 nucleotides
Psyr_0069: Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein, at 70,375 to 72,027
_0069
Psyr_0070: Psyr_0070 - hypothetical protein, at 72,227 to 73,060
_0070
Psyr_0071: Psyr_0071 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 72,996 to 74,972
_0071
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.294 kb on + strand, within Psyr_0069 at 71.295 kb on - strand, within Psyr_0069 at 71.938 kb on - strand at 71.943 kb on - strand at 71.970 kb on + strand at 71.970 kb on + strand at 72.055 kb on - strand at 72.103 kb on + strand at 72.103 kb on + strand at 72.104 kb on - strand at 72.104 kb on - strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.112 kb on - strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.114 kb on + strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.115 kb on - strand at 72.123 kb on - strand at 72.162 kb on + strand at 72.162 kb on + strand at 72.163 kb on - strand at 72.175 kb on + strand at 72.186 kb on + strand at 72.243 kb on + strand at 72.262 kb on - strand at 72.262 kb on - strand at 72.320 kb on - strand, within Psyr_0070 at 72.393 kb on + strand, within Psyr_0070 at 72.917 kb on + strand, within Psyr_0070 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.271 kb on + strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.272 kb on - strand, within Psyr_0071 at 73.914 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071 at 73.953 kb on + strand, within Psyr_0071
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 71,294 + Psyr_0069 0.56 -1.6 71,294 + Psyr_0069 0.56 +2.0 71,294 + Psyr_0069 0.56 +0.7 71,294 + Psyr_0069 0.56 +0.8 71,294 + Psyr_0069 0.56 -0.6 71,295 - Psyr_0069 0.56 +0.3 71,938 - -0.5 71,943 - +0.7 71,970 + +0.9 71,970 + +0.3 72,055 - -0.9 72,103 + -1.8 72,103 + +0.1 72,104 - -1.1 72,104 - +0.1 72,111 + +1.1 72,111 + -0.1 72,112 - -0.3 72,114 + +0.2 72,114 + +0.8 72,114 + -0.4 72,114 + +0.2 72,115 - -0.2 72,115 - -0.0 72,115 - -0.3 72,115 - -0.2 72,115 - +1.0 72,123 - -0.5 72,162 + +0.2 72,162 + -1.1 72,163 - +2.2 72,175 + -0.4 72,186 + +0.2 72,243 + +0.6 72,262 - -2.1 72,262 - +1.3 72,320 - Psyr_0070 0.11 -1.5 72,393 + Psyr_0070 0.20 +0.2 72,917 + Psyr_0070 0.83 -1.1 73,271 + Psyr_0071 0.14 +0.7 73,271 + Psyr_0071 0.14 +0.1 73,271 + Psyr_0071 0.14 +0.8 73,271 + Psyr_0071 0.14 +0.7 73,271 + Psyr_0071 0.14 +0.1 73,271 + Psyr_0071 0.14 -1.2 73,272 - Psyr_0071 0.14 +0.3 73,272 - Psyr_0071 0.14 +0.3 73,272 - Psyr_0071 0.14 -0.4 73,272 - Psyr_0071 0.14 +0.6 73,914 + Psyr_0071 0.46 +0.3 73,953 + Psyr_0071 0.48 -0.4 73,953 + Psyr_0071 0.48 -0.5
Or see this region's nucleotide sequence