Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0067

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
66,883	-		Psyr_0066	0.38	+0.6
66,883	-		Psyr_0066	0.38	-1.3
66,883	-		Psyr_0066	0.38	+0.4
67,023	+		Psyr_0066	0.50	+0.0
67,023	+		Psyr_0066	0.50	+0.5
67,024	-		Psyr_0066	0.50	+0.2
67,024	-		Psyr_0066	0.50	+0.6
67,169	-		Psyr_0066	0.62	+0.7
67,245	+		Psyr_0066	0.68	-1.5
67,246	-		Psyr_0066	0.68	-0.6
67,246	-		Psyr_0066	0.68	+2.6
67,506	+		Psyr_0066	0.89	-0.8
67,506	+		Psyr_0066	0.89	-0.9
67,506	+		Psyr_0066	0.89	-0.4
67,506	+		Psyr_0066	0.89	+0.1
67,506	+		Psyr_0066	0.89	-1.0
67,506	+		Psyr_0066	0.89	+1.7
67,506	+		Psyr_0066	0.89	+2.0
67,506	+		Psyr_0066	0.89	-1.0
67,507	-		Psyr_0066	0.89	+1.0
67,507	-		Psyr_0066	0.89	+1.0
67,507	-		Psyr_0066	0.89	-1.4
67,507	-		Psyr_0066	0.89	+0.7
67,507	-		Psyr_0066	0.89	-0.0
67,507	-		Psyr_0066	0.89	-0.6
67,507	-		Psyr_0066	0.89	-1.4
67,510	+		Psyr_0066	0.89	+1.0
67,510	+		Psyr_0066	0.89	-2.1
67,510	+		Psyr_0066	0.89	-0.3
67,511	-		Psyr_0066	0.89	-2.1
67,511	-		Psyr_0066	0.89	-0.2
67,511	-		Psyr_0066	0.89	+1.6
67,511	-		Psyr_0066	0.89	-1.6
67,522	-				+1.3
67,652	+				-0.8
67,755	+				+0.8
67,756	-				-0.2
67,862	-		Psyr_0067	0.18	+2.0
68,024	+		Psyr_0067	0.31	-0.5
68,024	+		Psyr_0067	0.31	+0.6
68,024	+		Psyr_0067	0.31	+1.0
68,024	+		Psyr_0067	0.31	-0.9
68,024	+		Psyr_0067	0.31	+0.8
68,024	+		Psyr_0067	0.31	+0.1
68,025	-		Psyr_0067	0.31	-0.5
68,025	-		Psyr_0067	0.31	-0.9
68,025	-		Psyr_0067	0.31	-0.9
68,025	-		Psyr_0067	0.31	-1.0
68,025	-		Psyr_0067	0.31	-0.0
68,025	-		Psyr_0067	0.31	-1.2
68,025	-		Psyr_0067	0.31	-1.5
68,025	-		Psyr_0067	0.31	-0.2
68,025	-		Psyr_0067	0.31	-0.1
68,025	-		Psyr_0067	0.31	-0.2
68,025	-		Psyr_0067	0.31	-0.5
68,028	+		Psyr_0067	0.32	-1.9
68,028	+		Psyr_0067	0.32	-1.3
68,028	+		Psyr_0067	0.32	-1.2
68,028	+		Psyr_0067	0.32	-0.1
68,028	+		Psyr_0067	0.32	-0.3
68,028	+		Psyr_0067	0.32	+1.2
68,028	+		Psyr_0067	0.32	+1.3
68,029	-		Psyr_0067	0.32	-2.6
68,029	-		Psyr_0067	0.32	+0.1
68,029	-		Psyr_0067	0.32	-1.7
68,066	+		Psyr_0067	0.35	+1.1
68,066	+		Psyr_0067	0.35	+0.1
68,067	-		Psyr_0067	0.35	+0.3
68,072	+		Psyr_0067	0.35	-0.0
68,072	+		Psyr_0067	0.35	-1.1
68,072	+		Psyr_0067	0.35	+1.0
68,073	-		Psyr_0067	0.35	+0.4
68,073	-		Psyr_0067	0.35	+0.2
68,115	+		Psyr_0067	0.39	-0.0
68,115	+		Psyr_0067	0.39	-0.3
68,116	-		Psyr_0067	0.39	-0.1
68,116	-		Psyr_0067	0.39	-0.0
68,311	+		Psyr_0067	0.55	-0.5
68,312	-		Psyr_0067	0.55	-0.7
68,339	+		Psyr_0067	0.58	-1.1
68,339	+		Psyr_0067	0.58	-0.3
68,340	-		Psyr_0067	0.58	-0.1
68,453	+		Psyr_0067	0.67	-0.2
68,453	+		Psyr_0067	0.67	-0.2
68,453	+		Psyr_0067	0.67	-0.3
68,453	+		Psyr_0067	0.67	+0.5
68,454	-		Psyr_0067	0.67	-1.0
68,454	-		Psyr_0067	0.67	+0.3
68,454	-		Psyr_0067	0.67	+1.2
68,454	-		Psyr_0067	0.67	+0.4
68,456	+		Psyr_0067	0.67	-0.9
68,456	+		Psyr_0067	0.67	-0.7
68,456	+		Psyr_0067	0.67	-0.2
68,456	+		Psyr_0067	0.67	-0.1
68,456	+		Psyr_0067	0.67	-0.8
68,457	-		Psyr_0067	0.68	-1.3
68,457	-		Psyr_0067	0.68	-0.8
68,457	-		Psyr_0067	0.68	-0.7
68,825	+				-0.4
68,825	+				-1.1
68,825	+				+0.4
68,826	-				-0.0
68,870	+				+0.6
68,870	+				-0.3
68,871	-				+0.2
68,942	+				-0.3
68,942	+				-0.0
68,942	+				+0.1
68,942	+				-1.3
68,942	+				-1.7
68,942	+				+0.2
68,942	+				-1.6
68,942	+				-2.5
68,943	-				-0.8
68,943	-				+0.7
68,943	-				+1.0
68,943	-				-1.4
68,943	-				+0.7
68,943	-				-0.3
68,943	-				-1.7
68,943	-				-0.0
68,943	-				-0.7
68,943	-				+1.1
68,943	-				+0.8
68,943	-				+0.7
68,954	-				-0.3
69,014	+				-0.5
69,056	+				-0.3
69,056	+				-0.2
69,057	-				-0.7
69,057	-				-1.6
69,155	+		Psyr_0068	0.16	-1.5
69,176	+		Psyr_0068	0.17	-1.0
69,176	+		Psyr_0068	0.17	-1.9
69,176	+		Psyr_0068	0.17	+2.0
69,177	-		Psyr_0068	0.17	-0.5
69,177	-		Psyr_0068	0.17	-0.6
69,177	-		Psyr_0068	0.17	+0.2
69,179	+		Psyr_0068	0.17	+0.2
69,180	-		Psyr_0068	0.17	-0.7
69,180	-		Psyr_0068	0.17	-1.2
69,180	-		Psyr_0068	0.17	-3.2
69,207	+		Psyr_0068	0.19	+0.7
69,208	-		Psyr_0068	0.19	-1.5
69,208	-		Psyr_0068	0.19	-0.0
69,255	+		Psyr_0068	0.23	+0.4
69,255	+		Psyr_0068	0.23	+0.1
69,434	+		Psyr_0068	0.36	+0.1
69,435	-		Psyr_0068	0.36	+0.5
69,435	-		Psyr_0068	0.36	-0.2
69,435	-		Psyr_0068	0.36	+0.9
69,636	-		Psyr_0068	0.50	-1.5
69,650	+		Psyr_0068	0.51	+1.0
69,650	+		Psyr_0068	0.51	+0.2