Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0054 and Psyr_0055 are separated by 216 nucleotides Psyr_0055 and Psyr_0056 are separated by 77 nucleotides Psyr_0056 and Psyr_0057 overlap by 10 nucleotides Psyr_0057 and Psyr_0058 are separated by 4 nucleotides
Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921
_0054
Psyr_0055: Psyr_0055 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 56,138 to 56,815
_0055
Psyr_0056: Psyr_0056 - Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ, at 56,893 to 57,393
_0056
Psyr_0057: Psyr_0057 - conserved hypothetical protein, at 57,384 to 57,536
_0057
Psyr_0058: Psyr_0058 - Disulfide bond formation protein DsbB, at 57,541 to 58,068
_0058
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 55.240 kb on + strand, within Psyr_0054 at 55.241 kb on - strand, within Psyr_0054 at 55.438 kb on + strand, within Psyr_0054 at 55.529 kb on - strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.894 kb on + strand at 55.894 kb on + strand at 55.894 kb on + strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.899 kb on - strand at 55.899 kb on - strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.959 kb on - strand at 55.959 kb on - strand at 56.019 kb on - strand at 56.137 kb on - strand at 56.137 kb on - strand at 56.148 kb on - strand at 56.304 kb on + strand, within Psyr_0055 at 56.305 kb on - strand, within Psyr_0055 at 56.579 kb on + strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.733 kb on - strand, within Psyr_0055 at 56.771 kb on - strand at 56.782 kb on - strand at 56.782 kb on - strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.874 kb on - strand at 56.874 kb on - strand at 56.874 kb on - strand at 56.928 kb on + strand at 56.928 kb on + strand at 56.929 kb on - strand at 57.092 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.269 kb on + strand, within Psyr_0056 at 57.269 kb on + strand, within Psyr_0056 at 57.270 kb on - strand, within Psyr_0056 at 57.270 kb on - strand, within Psyr_0056 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.438 kb on + strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.512 kb on + strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.523 kb on + strand at 57.523 kb on + strand at 57.523 kb on + strand at 57.532 kb on + strand at 57.532 kb on + strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.624 kb on + strand, within Psyr_0058 at 57.624 kb on + strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.658 kb on - strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 55,240 + Psyr_0054 0.33 -0.3 55,241 - Psyr_0054 0.33 -1.1 55,438 + Psyr_0054 0.52 -2.4 55,529 - Psyr_0054 0.61 +0.6 55,620 + Psyr_0054 0.70 +0.6 55,620 + Psyr_0054 0.70 -0.0 55,620 + Psyr_0054 0.70 +1.2 55,620 + Psyr_0054 0.70 +0.7 55,620 + Psyr_0054 0.70 +0.2 55,620 + Psyr_0054 0.70 +2.0 55,620 + Psyr_0054 0.70 -0.3 55,620 + Psyr_0054 0.70 +1.0 55,620 + Psyr_0054 0.70 +0.7 55,620 + Psyr_0054 0.70 -0.0 55,620 + Psyr_0054 0.70 +0.0 55,620 + Psyr_0054 0.70 +0.0 55,620 + Psyr_0054 0.70 -1.0 55,621 - Psyr_0054 0.70 +0.4 55,621 - Psyr_0054 0.70 -0.8 55,621 - Psyr_0054 0.70 -1.8 55,621 - Psyr_0054 0.70 +1.7 55,621 - Psyr_0054 0.70 -2.9 55,621 - Psyr_0054 0.70 +1.0 55,621 - Psyr_0054 0.70 -2.1 55,621 - Psyr_0054 0.70 -0.1 55,621 - Psyr_0054 0.70 +0.9 55,621 - Psyr_0054 0.70 -0.2 55,621 - Psyr_0054 0.70 -1.2 55,621 - Psyr_0054 0.70 -0.0 55,621 - Psyr_0054 0.70 -0.1 55,621 - Psyr_0054 0.70 +0.2 55,894 + -0.9 55,894 + +0.5 55,894 + +0.2 55,895 - -0.1 55,895 - -0.2 55,895 - +0.1 55,895 - -1.0 55,899 - -1.1 55,899 - +1.1 55,926 + +1.3 55,926 + +0.1 55,926 + +0.3 55,926 + -0.4 55,926 + +0.1 55,927 - -0.4 55,927 - +0.9 55,927 - +0.0 55,927 - -0.0 55,955 + -1.6 55,955 + -1.1 55,955 + -2.0 55,955 + +0.2 55,955 + -0.3 55,955 + -0.0 55,955 + +2.0 55,955 + -0.5 55,955 + -1.0 55,956 - +1.3 55,956 - +1.1 55,956 - -0.2 55,956 - -0.2 55,956 - -0.5 55,956 - -0.6 55,958 + -0.2 55,958 + -2.0 55,958 + +0.5 55,958 + -1.5 55,958 + +0.2 55,959 - -0.9 55,959 - -1.0 56,019 - -0.0 56,137 - +1.0 56,137 - -0.6 56,148 - +0.8 56,304 + Psyr_0055 0.24 -0.3 56,305 - Psyr_0055 0.25 +0.2 56,579 + Psyr_0055 0.65 -0.5 56,580 - Psyr_0055 0.65 +0.8 56,580 - Psyr_0055 0.65 +1.2 56,580 - Psyr_0055 0.65 -1.3 56,732 + Psyr_0055 0.88 -0.6 56,732 + Psyr_0055 0.88 -0.6 56,732 + Psyr_0055 0.88 -1.4 56,733 - Psyr_0055 0.88 -0.3 56,771 - -1.2 56,782 - -0.0 56,782 - +0.5 56,813 + -1.6 56,813 + +0.4 56,813 + -2.7 56,814 - +1.3 56,814 - +2.0 56,814 - -0.8 56,856 + +0.3 56,856 + +0.0 56,856 + +0.0 56,856 + +0.1 56,857 - -0.7 56,857 - +1.0 56,857 - -0.0 56,857 - -2.0 56,873 + +1.6 56,873 + +0.1 56,873 + +4.0 56,873 + +0.5 56,874 - -0.6 56,874 - +0.1 56,874 - +0.1 56,928 + +2.6 56,928 + +0.7 56,929 - -0.9 57,092 + Psyr_0056 0.40 +0.9 57,161 + Psyr_0056 0.53 +0.1 57,161 + Psyr_0056 0.53 +0.5 57,161 + Psyr_0056 0.53 -1.0 57,188 + Psyr_0056 0.59 -0.6 57,188 + Psyr_0056 0.59 -0.1 57,188 + Psyr_0056 0.59 -0.5 57,188 + Psyr_0056 0.59 -0.9 57,188 + Psyr_0056 0.59 -0.8 57,188 + Psyr_0056 0.59 -0.9 57,188 + Psyr_0056 0.59 -0.6 57,189 - Psyr_0056 0.59 -0.6 57,189 - Psyr_0056 0.59 -0.1 57,189 - Psyr_0056 0.59 -1.5 57,189 - Psyr_0056 0.59 +0.1 57,189 - Psyr_0056 0.59 -0.2 57,269 + Psyr_0056 0.75 +3.6 57,269 + Psyr_0056 0.75 +0.3 57,270 - Psyr_0056 0.75 -0.2 57,270 - Psyr_0056 0.75 +0.9 57,416 - Psyr_0057 0.21 +2.0 57,416 - Psyr_0057 0.21 -1.5 57,416 - Psyr_0057 0.21 +1.2 57,416 - Psyr_0057 0.21 -1.0 57,416 - Psyr_0057 0.21 +1.2 57,438 + Psyr_0057 0.35 +0.4 57,439 - Psyr_0057 0.36 -0.5 57,439 - Psyr_0057 0.36 -0.4 57,439 - Psyr_0057 0.36 -0.6 57,439 - Psyr_0057 0.36 +0.7 57,457 + Psyr_0057 0.48 -0.9 57,457 + Psyr_0057 0.48 +0.1 57,457 + Psyr_0057 0.48 +0.8 57,457 + Psyr_0057 0.48 -1.1 57,457 + Psyr_0057 0.48 +1.2 57,457 + Psyr_0057 0.48 -0.8 57,457 + Psyr_0057 0.48 +1.5 57,457 + Psyr_0057 0.48 +0.3 57,457 + Psyr_0057 0.48 -0.1 57,458 - Psyr_0057 0.48 -0.6 57,458 - Psyr_0057 0.48 -1.3 57,458 - Psyr_0057 0.48 +0.7 57,458 - Psyr_0057 0.48 -1.2 57,485 + Psyr_0057 0.66 -1.0 57,485 + Psyr_0057 0.66 +0.9 57,512 + Psyr_0057 0.84 +0.8 57,513 - Psyr_0057 0.84 +1.3 57,513 - Psyr_0057 0.84 -0.8 57,523 + +0.5 57,523 + +1.7 57,523 + -0.7 57,532 + +2.0 57,532 + +2.7 57,533 - +0.1 57,533 - +0.4 57,533 - -0.6 57,533 - -1.4 57,533 - -0.4 57,533 - -0.2 57,624 + Psyr_0058 0.16 +0.7 57,624 + Psyr_0058 0.16 -0.9 57,625 - Psyr_0058 0.16 -0.9 57,625 - Psyr_0058 0.16 +0.2 57,625 - Psyr_0058 0.16 +1.0 57,625 - Psyr_0058 0.16 -0.8 57,625 - Psyr_0058 0.16 +2.0 57,625 - Psyr_0058 0.16 +3.6 57,625 - Psyr_0058 0.16 -0.4 57,625 - Psyr_0058 0.16 -0.9 57,658 - Psyr_0058 0.22 -0.3 57,723 + Psyr_0058 0.34 -0.3 57,723 + Psyr_0058 0.34 -1.2 57,723 + Psyr_0058 0.34 +0.3 57,724 - Psyr_0058 0.35 +0.5 57,724 - Psyr_0058 0.35 +0.3 57,724 - Psyr_0058 0.35 -0.4 57,746 - Psyr_0058 0.39 +3.0 57,746 - Psyr_0058 0.39 +0.1
Or see this region's nucleotide sequence