Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08740

Experiment: H2 McCas with 1 hour oxygen exposure

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08730 and MMP_RS08735 are separated by 99 nucleotidesMMP_RS08735 and MMP_RS08740 are separated by 187 nucleotidesMMP_RS08740 and MMP_RS08745 are separated by 697 nucleotides MMP_RS08730: MMP_RS08730 - F420-non-reducing hydrogenase subunit, at 1,635,430 to 1,636,296 _RS08730 MMP_RS08735: MMP_RS08735 - hydrogenase iron-sulfur subunit, at 1,636,396 to 1,636,800 _RS08735 MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964 _RS08740 MMP_RS08745: MMP_RS08745 - CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase, at 1,639,662 to 1,640,198 _RS08745 Position (kb) 1636 1637 1638 1639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1635.999 kb on + strandat 1636.112 kb on + strandat 1636.783 kb on + strandat 1637.178 kb on - strandat 1637.198 kb on - strandat 1637.199 kb on + strandat 1637.199 kb on + strandat 1637.217 kb on + strandat 1637.819 kb on - strandat 1638.155 kb on + strandat 1638.162 kb on + strandat 1638.191 kb on - strandat 1638.247 kb on + strandat 1638.456 kb on - strandat 1638.509 kb on + strandat 1638.527 kb on + strandat 1639.009 kb on - strandat 1639.010 kb on + strandat 1639.011 kb on - strandat 1639.011 kb on - strandat 1639.039 kb on + strandat 1639.206 kb on + strandat 1639.217 kb on + strandat 1639.245 kb on + strandat 1639.275 kb on - strandat 1639.276 kb on + strandat 1639.277 kb on - strandat 1639.278 kb on + strandat 1639.278 kb on + strandat 1639.279 kb on - strandat 1639.280 kb on + strandat 1639.280 kb on + strandat 1639.298 kb on - strandat 1639.339 kb on - strandat 1639.373 kb on + strandat 1639.421 kb on + strandat 1639.439 kb on + strandat 1639.439 kb on + strandat 1639.451 kb on - strandat 1639.452 kb on + strandat 1639.516 kb on - strandat 1639.521 kb on - strandat 1639.522 kb on + strandat 1639.522 kb on + strandat 1639.525 kb on - strandat 1639.526 kb on + strandat 1639.593 kb on + strandat 1639.605 kb on - strandat 1639.605 kb on - strandat 1639.625 kb on - strandat 1639.625 kb on - strandat 1639.626 kb on + strandat 1639.626 kb on + strandat 1639.630 kb on - strandat 1639.631 kb on + strandat 1639.631 kb on + strandat 1639.681 kb on - strandat 1639.699 kb on + strandat 1639.713 kb on - strandat 1639.714 kb on + strandat 1639.717 kb on - strand, within MMP_RS08745at 1639.736 kb on - strand, within MMP_RS08745at 1639.810 kb on - strand, within MMP_RS08745at 1639.874 kb on - strand, within MMP_RS08745at 1639.880 kb on - strand, within MMP_RS08745at 1639.881 kb on + strand, within MMP_RS08745at 1639.882 kb on - strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.883 kb on + strand, within MMP_RS08745at 1639.885 kb on - strand, within MMP_RS08745at 1639.886 kb on + strand, within MMP_RS08745at 1639.886 kb on + strand, within MMP_RS08745at 1639.887 kb on - strand, within MMP_RS08745at 1639.889 kb on - strand, within MMP_RS08745at 1639.889 kb on - strand, within MMP_RS08745at 1639.931 kb on - strand, within MMP_RS08745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
remove
1,635,999 + -1.1
1,636,112 + -3.6
1,636,783 + -1.4
1,637,178 - -1.5
1,637,198 - -2.5
1,637,199 + -2.8
1,637,199 + -2.7
1,637,217 + -1.4
1,637,819 - -2.3
1,638,155 + -1.7
1,638,162 + -1.6
1,638,191 - -2.5
1,638,247 + -1.6
1,638,456 - -2.9
1,638,509 + -1.7
1,638,527 + -0.8
1,639,009 - -1.8
1,639,010 + -1.8
1,639,011 - -1.2
1,639,011 - -3.2
1,639,039 + +0.9
1,639,206 + +0.8
1,639,217 + +1.5
1,639,245 + +0.9
1,639,275 - -0.6
1,639,276 + -0.3
1,639,277 - -0.4
1,639,278 + -0.5
1,639,278 + -0.3
1,639,279 - -0.5
1,639,280 + -0.2
1,639,280 + -1.5
1,639,298 - -0.1
1,639,339 - -2.7
1,639,373 + -1.2
1,639,421 + +0.8
1,639,439 + +1.0
1,639,439 + +1.4
1,639,451 - +0.1
1,639,452 + +1.4
1,639,516 - +0.4
1,639,521 - +0.9
1,639,522 + +1.5
1,639,522 + +0.9
1,639,525 - +1.8
1,639,526 + +1.7
1,639,593 + +1.5
1,639,605 - -1.1
1,639,605 - -1.1
1,639,625 - -2.0
1,639,625 - -2.1
1,639,626 + -1.7
1,639,626 + -0.3
1,639,630 - -1.7
1,639,631 + -2.4
1,639,631 + -3.0
1,639,681 - -4.6
1,639,699 + -1.5
1,639,713 - -1.6
1,639,714 + -3.6
1,639,717 - MMP_RS08745 0.10 -2.8
1,639,736 - MMP_RS08745 0.14 -1.9
1,639,810 - MMP_RS08745 0.28 -0.8
1,639,874 - MMP_RS08745 0.39 -3.2
1,639,880 - MMP_RS08745 0.41 -1.2
1,639,881 + MMP_RS08745 0.41 -2.3
1,639,882 - MMP_RS08745 0.41 -1.9
1,639,883 + MMP_RS08745 0.41 -3.1
1,639,883 + MMP_RS08745 0.41 -1.5
1,639,883 + MMP_RS08745 0.41 -2.3
1,639,885 - MMP_RS08745 0.42 -1.2
1,639,886 + MMP_RS08745 0.42 -1.7
1,639,886 + MMP_RS08745 0.42 -2.0
1,639,887 - MMP_RS08745 0.42 -1.4
1,639,889 - MMP_RS08745 0.42 -0.1
1,639,889 - MMP_RS08745 0.42 -0.9
1,639,931 - MMP_RS08745 0.50 -1.3

Or see this region's nucleotide sequence