Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08270

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08260 and MMP_RS08265 are separated by 122 nucleotidesMMP_RS08265 and MMP_RS08270 are separated by 297 nucleotidesMMP_RS08270 and MMP_RS08275 are separated by 69 nucleotidesMMP_RS08275 and MMP_RS08280 are separated by 19 nucleotides MMP_RS08260: MMP_RS08260 - DUF99 family protein, at 1,554,972 to 1,555,523 _RS08260 MMP_RS08265: MMP_RS08265 - rubrerythrin, at 1,555,646 to 1,555,954 _RS08265 MMP_RS08270: MMP_RS08270 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 1,556,252 to 1,557,160 _RS08270 MMP_RS08275: MMP_RS08275 - hypothetical protein, at 1,557,230 to 1,557,904 _RS08275 MMP_RS08280: MMP_RS08280 - proteasome assembly chaperone family protein, at 1,557,924 to 1,558,676 _RS08280 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -2 -1 0 1 2at 1555.388 kb on - strand, within MMP_RS08260at 1555.389 kb on + strand, within MMP_RS08260at 1555.403 kb on - strand, within MMP_RS08260at 1555.411 kb on - strand, within MMP_RS08260at 1555.560 kb on + strandat 1555.568 kb on - strandat 1555.569 kb on + strandat 1555.572 kb on - strandat 1555.573 kb on + strandat 1555.573 kb on + strandat 1555.595 kb on + strandat 1555.598 kb on - strandat 1555.621 kb on + strandat 1555.645 kb on - strandat 1555.756 kb on + strand, within MMP_RS08265at 1555.764 kb on + strand, within MMP_RS08265at 1555.766 kb on + strand, within MMP_RS08265at 1555.821 kb on - strand, within MMP_RS08265at 1555.953 kb on + strandat 1555.958 kb on + strandat 1555.961 kb on - strandat 1555.962 kb on + strandat 1555.966 kb on - strandat 1555.967 kb on + strandat 1555.967 kb on + strandat 1555.991 kb on + strandat 1556.002 kb on - strandat 1556.003 kb on + strandat 1556.068 kb on - strandat 1556.068 kb on - strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.069 kb on + strandat 1556.194 kb on - strandat 1556.204 kb on + strandat 1556.269 kb on + strandat 1556.889 kb on + strandat 1557.172 kb on - strandat 1557.173 kb on + strandat 1557.179 kb on + strandat 1557.209 kb on + strandat 1557.212 kb on - strandat 1557.275 kb on + strandat 1557.300 kb on + strand, within MMP_RS08275at 1557.300 kb on + strand, within MMP_RS08275at 1557.300 kb on + strand, within MMP_RS08275at 1557.525 kb on - strand, within MMP_RS08275at 1557.526 kb on + strand, within MMP_RS08275at 1557.526 kb on + strand, within MMP_RS08275at 1557.530 kb on - strand, within MMP_RS08275at 1557.551 kb on - strand, within MMP_RS08275at 1557.552 kb on + strand, within MMP_RS08275at 1557.552 kb on + strand, within MMP_RS08275at 1557.556 kb on + strand, within MMP_RS08275at 1557.556 kb on + strand, within MMP_RS08275at 1557.613 kb on + strand, within MMP_RS08275at 1557.613 kb on + strand, within MMP_RS08275at 1557.614 kb on - strand, within MMP_RS08275at 1557.615 kb on + strand, within MMP_RS08275at 1557.636 kb on - strand, within MMP_RS08275at 1557.808 kb on - strand, within MMP_RS08275at 1557.935 kb on + strandat 1557.935 kb on + strandat 1557.935 kb on + strandat 1557.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,555,388 - MMP_RS08260 0.75 +1.8
1,555,389 + MMP_RS08260 0.76 +1.4
1,555,403 - MMP_RS08260 0.78 +0.5
1,555,411 - MMP_RS08260 0.80 +1.1
1,555,560 + +0.1
1,555,568 - -0.5
1,555,569 + -0.9
1,555,572 - +0.8
1,555,573 + +0.5
1,555,573 + +1.1
1,555,595 + +0.5
1,555,598 - -0.1
1,555,621 + -0.1
1,555,645 - +0.9
1,555,756 + MMP_RS08265 0.36 +0.8
1,555,764 + MMP_RS08265 0.38 +0.8
1,555,766 + MMP_RS08265 0.39 +0.6
1,555,821 - MMP_RS08265 0.57 +0.5
1,555,953 + -0.5
1,555,958 + +1.3
1,555,961 - +0.8
1,555,962 + -0.8
1,555,966 - +0.3
1,555,967 + +0.3
1,555,967 + +0.0
1,555,991 + -0.6
1,556,002 - +0.5
1,556,003 + +0.7
1,556,068 - -0.4
1,556,068 - +0.7
1,556,069 + +0.5
1,556,069 + +1.7
1,556,069 + +0.5
1,556,069 + -0.1
1,556,194 - +1.0
1,556,204 + -0.5
1,556,269 + -1.3
1,556,889 + -2.1
1,557,172 - +0.4
1,557,173 + +0.7
1,557,179 + -1.0
1,557,209 + +0.2
1,557,212 - -0.5
1,557,275 + +0.1
1,557,300 + MMP_RS08275 0.10 +1.5
1,557,300 + MMP_RS08275 0.10 +1.3
1,557,300 + MMP_RS08275 0.10 +0.3
1,557,525 - MMP_RS08275 0.44 +0.6
1,557,526 + MMP_RS08275 0.44 +0.5
1,557,526 + MMP_RS08275 0.44 +0.8
1,557,530 - MMP_RS08275 0.44 +0.5
1,557,551 - MMP_RS08275 0.48 -1.4
1,557,552 + MMP_RS08275 0.48 -1.0
1,557,552 + MMP_RS08275 0.48 +0.9
1,557,556 + MMP_RS08275 0.48 -1.3
1,557,556 + MMP_RS08275 0.48 +0.5
1,557,613 + MMP_RS08275 0.57 +0.6
1,557,613 + MMP_RS08275 0.57 +0.4
1,557,614 - MMP_RS08275 0.57 +0.1
1,557,615 + MMP_RS08275 0.57 +0.4
1,557,636 - MMP_RS08275 0.60 +0.9
1,557,808 - MMP_RS08275 0.86 -1.2
1,557,935 + +1.2
1,557,935 + -1.1
1,557,935 + +1.3
1,557,940 + +0.5

Or see this region's nucleotide sequence