Experiment: H2 McCas with 1 hour oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08260 and MMP_RS08265 are separated by 122 nucleotides MMP_RS08265 and MMP_RS08270 are separated by 297 nucleotides MMP_RS08270 and MMP_RS08275 are separated by 69 nucleotides MMP_RS08275 and MMP_RS08280 are separated by 19 nucleotides
MMP_RS08260: MMP_RS08260 - DUF99 family protein, at 1,554,972 to 1,555,523
_RS08260
MMP_RS08265: MMP_RS08265 - rubrerythrin, at 1,555,646 to 1,555,954
_RS08265
MMP_RS08270: MMP_RS08270 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 1,556,252 to 1,557,160
_RS08270
MMP_RS08275: MMP_RS08275 - hypothetical protein, at 1,557,230 to 1,557,904
_RS08275
MMP_RS08280: MMP_RS08280 - proteasome assembly chaperone family protein, at 1,557,924 to 1,558,676
_RS08280
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1555.388 kb on - strand, within MMP_RS08260 at 1555.389 kb on + strand, within MMP_RS08260 at 1555.403 kb on - strand, within MMP_RS08260 at 1555.411 kb on - strand, within MMP_RS08260 at 1555.560 kb on + strand at 1555.568 kb on - strand at 1555.569 kb on + strand at 1555.572 kb on - strand at 1555.573 kb on + strand at 1555.573 kb on + strand at 1555.595 kb on + strand at 1555.598 kb on - strand at 1555.621 kb on + strand at 1555.645 kb on - strand at 1555.756 kb on + strand, within MMP_RS08265 at 1555.764 kb on + strand, within MMP_RS08265 at 1555.766 kb on + strand, within MMP_RS08265 at 1555.821 kb on - strand, within MMP_RS08265 at 1555.953 kb on + strand at 1555.958 kb on + strand at 1555.961 kb on - strand at 1555.962 kb on + strand at 1555.966 kb on - strand at 1555.967 kb on + strand at 1555.967 kb on + strand at 1555.991 kb on + strand at 1556.002 kb on - strand at 1556.003 kb on + strand at 1556.068 kb on - strand at 1556.068 kb on - strand at 1556.069 kb on + strand at 1556.069 kb on + strand at 1556.069 kb on + strand at 1556.069 kb on + strand at 1556.194 kb on - strand at 1556.204 kb on + strand at 1556.269 kb on + strand at 1556.889 kb on + strand at 1557.172 kb on - strand at 1557.173 kb on + strand at 1557.179 kb on + strand at 1557.209 kb on + strand at 1557.212 kb on - strand at 1557.275 kb on + strand at 1557.300 kb on + strand, within MMP_RS08275 at 1557.300 kb on + strand, within MMP_RS08275 at 1557.300 kb on + strand, within MMP_RS08275 at 1557.525 kb on - strand, within MMP_RS08275 at 1557.526 kb on + strand, within MMP_RS08275 at 1557.526 kb on + strand, within MMP_RS08275 at 1557.530 kb on - strand, within MMP_RS08275 at 1557.551 kb on - strand, within MMP_RS08275 at 1557.552 kb on + strand, within MMP_RS08275 at 1557.552 kb on + strand, within MMP_RS08275 at 1557.556 kb on + strand, within MMP_RS08275 at 1557.556 kb on + strand, within MMP_RS08275 at 1557.613 kb on + strand, within MMP_RS08275 at 1557.613 kb on + strand, within MMP_RS08275 at 1557.614 kb on - strand, within MMP_RS08275 at 1557.615 kb on + strand, within MMP_RS08275 at 1557.636 kb on - strand, within MMP_RS08275 at 1557.808 kb on - strand, within MMP_RS08275 at 1557.935 kb on + strand at 1557.935 kb on + strand at 1557.935 kb on + strand at 1557.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure remove 1,555,388 - MMP_RS08260 0.75 +1.8 1,555,389 + MMP_RS08260 0.76 +1.4 1,555,403 - MMP_RS08260 0.78 +0.5 1,555,411 - MMP_RS08260 0.80 +1.1 1,555,560 + +0.1 1,555,568 - -0.5 1,555,569 + -0.9 1,555,572 - +0.8 1,555,573 + +0.5 1,555,573 + +1.1 1,555,595 + +0.5 1,555,598 - -0.1 1,555,621 + -0.1 1,555,645 - +0.9 1,555,756 + MMP_RS08265 0.36 +0.8 1,555,764 + MMP_RS08265 0.38 +0.8 1,555,766 + MMP_RS08265 0.39 +0.6 1,555,821 - MMP_RS08265 0.57 +0.5 1,555,953 + -0.5 1,555,958 + +1.3 1,555,961 - +0.8 1,555,962 + -0.8 1,555,966 - +0.3 1,555,967 + +0.3 1,555,967 + +0.0 1,555,991 + -0.6 1,556,002 - +0.5 1,556,003 + +0.7 1,556,068 - -0.4 1,556,068 - +0.7 1,556,069 + +0.5 1,556,069 + +1.7 1,556,069 + +0.5 1,556,069 + -0.1 1,556,194 - +1.0 1,556,204 + -0.5 1,556,269 + -1.3 1,556,889 + -2.1 1,557,172 - +0.4 1,557,173 + +0.7 1,557,179 + -1.0 1,557,209 + +0.2 1,557,212 - -0.5 1,557,275 + +0.1 1,557,300 + MMP_RS08275 0.10 +1.5 1,557,300 + MMP_RS08275 0.10 +1.3 1,557,300 + MMP_RS08275 0.10 +0.3 1,557,525 - MMP_RS08275 0.44 +0.6 1,557,526 + MMP_RS08275 0.44 +0.5 1,557,526 + MMP_RS08275 0.44 +0.8 1,557,530 - MMP_RS08275 0.44 +0.5 1,557,551 - MMP_RS08275 0.48 -1.4 1,557,552 + MMP_RS08275 0.48 -1.0 1,557,552 + MMP_RS08275 0.48 +0.9 1,557,556 + MMP_RS08275 0.48 -1.3 1,557,556 + MMP_RS08275 0.48 +0.5 1,557,613 + MMP_RS08275 0.57 +0.6 1,557,613 + MMP_RS08275 0.57 +0.4 1,557,614 - MMP_RS08275 0.57 +0.1 1,557,615 + MMP_RS08275 0.57 +0.4 1,557,636 - MMP_RS08275 0.60 +0.9 1,557,808 - MMP_RS08275 0.86 -1.2 1,557,935 + +1.2 1,557,935 + -1.1 1,557,935 + +1.3 1,557,940 + +0.5
Or see this region's nucleotide sequence