Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08050

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08040 and MMP_RS08045 are separated by 10 nucleotidesMMP_RS08045 and MMP_RS08050 are separated by 21 nucleotidesMMP_RS08050 and MMP_RS08055 are separated by 16 nucleotidesMMP_RS08055 and MMP_RS08060 are separated by 4 nucleotides MMP_RS08040: MMP_RS08040 - tetrahydromethanopterin S-methyltransferase subunit C, at 1,516,564 to 1,517,352 _RS08040 MMP_RS08045: MMP_RS08045 - tetrahydromethanopterin S-methyltransferase subunit B, at 1,517,363 to 1,517,689 _RS08045 MMP_RS08050: MMP_RS08050 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,517,711 to 1,518,430 _RS08050 MMP_RS08055: MMP_RS08055 - tetrahydromethanopterin S-methyltransferase subunit A, at 1,518,447 to 1,519,208 _RS08055 MMP_RS08060: MMP_RS08060 - tetrahydromethanopterin S-methyltransferase subunit G, at 1,519,213 to 1,519,437 _RS08060 Position (kb) 1517 1518 1519Strain fitness (log2 ratio) -3 -2 -1 0 1at 1516.763 kb on - strandat 1516.794 kb on + strandat 1516.869 kb on - strandat 1516.972 kb on + strandat 1517.234 kb on - strandat 1517.235 kb on + strandat 1517.270 kb on + strandat 1517.320 kb on + strandat 1517.323 kb on - strandat 1517.324 kb on + strandat 1517.379 kb on - strandat 1517.379 kb on - strandat 1517.410 kb on + strandat 1517.644 kb on + strandat 1518.362 kb on - strandat 1518.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,516,763 - -1.8
1,516,794 + -0.8
1,516,869 - +0.1
1,516,972 + -1.5
1,517,234 - -1.0
1,517,235 + -1.9
1,517,270 + -2.5
1,517,320 + -0.9
1,517,323 - -3.0
1,517,324 + -0.0
1,517,379 - -0.9
1,517,379 - -1.1
1,517,410 + -1.9
1,517,644 + +0.1
1,518,362 - -2.8
1,518,391 + -0.8

Or see this region's nucleotide sequence