Experiment: H2 McCas with 1 hour oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08030 and MMP_RS08035 are separated by 26 nucleotides MMP_RS08035 and MMP_RS08040 are separated by 37 nucleotides MMP_RS08040 and MMP_RS08045 are separated by 10 nucleotides
MMP_RS08030: MMP_RS08030 - tetrahydromethanopterin S-methyltransferase subunit E, at 1,514,893 to 1,515,792
_RS08030
MMP_RS08035: MMP_RS08035 - tetrahydromethanopterin S-methyltransferase subunit D, at 1,515,819 to 1,516,526
_RS08035
MMP_RS08040: MMP_RS08040 - tetrahydromethanopterin S-methyltransferase subunit C, at 1,516,564 to 1,517,352
_RS08040
MMP_RS08045: MMP_RS08045 - tetrahydromethanopterin S-methyltransferase subunit B, at 1,517,363 to 1,517,689
_RS08045
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1515.049 kb on - strand at 1515.095 kb on + strand at 1515.234 kb on + strand at 1515.303 kb on + strand at 1515.316 kb on + strand at 1515.675 kb on + strand at 1515.714 kb on + strand at 1515.948 kb on + strand at 1515.995 kb on + strand at 1516.104 kb on + strand at 1516.129 kb on + strand at 1516.133 kb on + strand at 1516.133 kb on + strand at 1516.135 kb on + strand at 1516.305 kb on - strand at 1516.560 kb on + strand at 1516.763 kb on - strand at 1516.794 kb on + strand at 1516.869 kb on - strand at 1516.972 kb on + strand at 1517.234 kb on - strand at 1517.235 kb on + strand at 1517.270 kb on + strand at 1517.320 kb on + strand at 1517.323 kb on - strand at 1517.324 kb on + strand at 1517.379 kb on - strand at 1517.379 kb on - strand at 1517.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure remove 1,515,049 - -2.8 1,515,095 + -1.6 1,515,234 + -1.0 1,515,303 + -0.9 1,515,316 + -1.6 1,515,675 + -3.2 1,515,714 + -1.4 1,515,948 + -2.6 1,515,995 + -0.8 1,516,104 + -1.4 1,516,129 + -2.3 1,516,133 + -0.9 1,516,133 + -1.1 1,516,135 + -0.0 1,516,305 - -1.8 1,516,560 + -1.0 1,516,763 - -1.8 1,516,794 + -0.8 1,516,869 - +0.1 1,516,972 + -1.5 1,517,234 - -1.0 1,517,235 + -1.9 1,517,270 + -2.5 1,517,320 + -0.9 1,517,323 - -3.0 1,517,324 + -0.0 1,517,379 - -0.9 1,517,379 - -1.1 1,517,410 + -1.9
Or see this region's nucleotide sequence