Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08030

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08025 and MMP_RS08030 are separated by 267 nucleotidesMMP_RS08030 and MMP_RS08035 are separated by 26 nucleotidesMMP_RS08035 and MMP_RS08040 are separated by 37 nucleotides MMP_RS08025: MMP_RS08025 - coenzyme-B sulfoethylthiotransferase subunit alpha, at 1,512,964 to 1,514,625 _RS08025 MMP_RS08030: MMP_RS08030 - tetrahydromethanopterin S-methyltransferase subunit E, at 1,514,893 to 1,515,792 _RS08030 MMP_RS08035: MMP_RS08035 - tetrahydromethanopterin S-methyltransferase subunit D, at 1,515,819 to 1,516,526 _RS08035 MMP_RS08040: MMP_RS08040 - tetrahydromethanopterin S-methyltransferase subunit C, at 1,516,564 to 1,517,352 _RS08040 Position (kb) 1514 1515 1516Strain fitness (log2 ratio) -3 -2 -1 0 1at 1513.939 kb on - strandat 1514.018 kb on + strandat 1514.147 kb on - strandat 1514.211 kb on + strandat 1514.381 kb on - strandat 1514.624 kb on + strandat 1514.664 kb on - strandat 1514.666 kb on - strandat 1514.670 kb on - strandat 1514.703 kb on + strandat 1514.780 kb on - strandat 1515.049 kb on - strandat 1515.095 kb on + strandat 1515.234 kb on + strandat 1515.303 kb on + strandat 1515.316 kb on + strandat 1515.675 kb on + strandat 1515.714 kb on + strandat 1515.948 kb on + strandat 1515.995 kb on + strandat 1516.104 kb on + strandat 1516.129 kb on + strandat 1516.133 kb on + strandat 1516.133 kb on + strandat 1516.135 kb on + strandat 1516.305 kb on - strandat 1516.560 kb on + strandat 1516.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,513,939 - -3.2
1,514,018 + -1.8
1,514,147 - -2.7
1,514,211 + -2.5
1,514,381 - -2.0
1,514,624 + -1.0
1,514,664 - -1.2
1,514,666 - -0.5
1,514,670 - -1.0
1,514,703 + -0.3
1,514,780 - -2.5
1,515,049 - -2.8
1,515,095 + -1.6
1,515,234 + -1.0
1,515,303 + -0.9
1,515,316 + -1.6
1,515,675 + -3.2
1,515,714 + -1.4
1,515,948 + -2.6
1,515,995 + -0.8
1,516,104 + -1.4
1,516,129 + -2.3
1,516,133 + -0.9
1,516,133 + -1.1
1,516,135 + -0.0
1,516,305 - -1.8
1,516,560 + -1.0
1,516,763 - -1.8

Or see this region's nucleotide sequence