Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08025

Experiment: H2 McCas with 1 hour oxygen exposure

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08015 and MMP_RS08020 are separated by 9 nucleotidesMMP_RS08020 and MMP_RS08025 are separated by 47 nucleotidesMMP_RS08025 and MMP_RS08030 are separated by 267 nucleotides MMP_RS08015: MMP_RS08015 - methyl-coenzyme M reductase I operon protein C, at 1,511,528 to 1,512,124 _RS08015 MMP_RS08020: MMP_RS08020 - coenzyme-B sulfoethylthiotransferase subunit gamma, at 1,512,134 to 1,512,916 _RS08020 MMP_RS08025: MMP_RS08025 - coenzyme-B sulfoethylthiotransferase subunit alpha, at 1,512,964 to 1,514,625 _RS08025 MMP_RS08030: MMP_RS08030 - tetrahydromethanopterin S-methyltransferase subunit E, at 1,514,893 to 1,515,792 _RS08030 Position (kb) 1512 1513 1514 1515Strain fitness (log2 ratio) -3 -2 -1 0 1at 1512.118 kb on + strandat 1512.881 kb on - strandat 1513.887 kb on + strandat 1513.939 kb on - strandat 1514.018 kb on + strandat 1514.147 kb on - strandat 1514.211 kb on + strandat 1514.381 kb on - strandat 1514.624 kb on + strandat 1514.664 kb on - strandat 1514.666 kb on - strandat 1514.670 kb on - strandat 1514.703 kb on + strandat 1514.780 kb on - strandat 1515.049 kb on - strandat 1515.095 kb on + strandat 1515.234 kb on + strandat 1515.303 kb on + strandat 1515.316 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
remove
1,512,118 + -3.0
1,512,881 - +0.1
1,513,887 + -2.0
1,513,939 - -3.2
1,514,018 + -1.8
1,514,147 - -2.7
1,514,211 + -2.5
1,514,381 - -2.0
1,514,624 + -1.0
1,514,664 - -1.2
1,514,666 - -0.5
1,514,670 - -1.0
1,514,703 + -0.3
1,514,780 - -2.5
1,515,049 - -2.8
1,515,095 + -1.6
1,515,234 + -1.0
1,515,303 + -0.9
1,515,316 + -1.6

Or see this region's nucleotide sequence