Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08015

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08005 and MMP_RS08010 are separated by 11 nucleotidesMMP_RS08010 and MMP_RS08015 are separated by 8 nucleotidesMMP_RS08015 and MMP_RS08020 are separated by 9 nucleotidesMMP_RS08020 and MMP_RS08025 are separated by 47 nucleotides MMP_RS08005: MMP_RS08005 - coenzyme-B sulfoethylthiotransferase subunit beta, at 1,509,697 to 1,511,028 _RS08005 MMP_RS08010: MMP_RS08010 - methyl-coenzyme M reductase operon protein D, at 1,511,040 to 1,511,519 _RS08010 MMP_RS08015: MMP_RS08015 - methyl-coenzyme M reductase I operon protein C, at 1,511,528 to 1,512,124 _RS08015 MMP_RS08020: MMP_RS08020 - coenzyme-B sulfoethylthiotransferase subunit gamma, at 1,512,134 to 1,512,916 _RS08020 MMP_RS08025: MMP_RS08025 - coenzyme-B sulfoethylthiotransferase subunit alpha, at 1,512,964 to 1,514,625 _RS08025 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1at 1511.447 kb on + strandat 1511.836 kb on - strandat 1511.853 kb on - strandat 1512.118 kb on + strandat 1512.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,511,447 + -0.3
1,511,836 - -1.0
1,511,853 - -1.9
1,512,118 + -3.0
1,512,881 - +0.1

Or see this region's nucleotide sequence