Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08005

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08000 and MMP_RS08005 are separated by 259 nucleotidesMMP_RS08005 and MMP_RS08010 are separated by 11 nucleotidesMMP_RS08010 and MMP_RS08015 are separated by 8 nucleotides MMP_RS08000: MMP_RS08000 - methyl coenzyme M reductase-arginine methyltransferase Mmp10, at 1,508,127 to 1,509,437 _RS08000 MMP_RS08005: MMP_RS08005 - coenzyme-B sulfoethylthiotransferase subunit beta, at 1,509,697 to 1,511,028 _RS08005 MMP_RS08010: MMP_RS08010 - methyl-coenzyme M reductase operon protein D, at 1,511,040 to 1,511,519 _RS08010 MMP_RS08015: MMP_RS08015 - methyl-coenzyme M reductase I operon protein C, at 1,511,528 to 1,512,124 _RS08015 Position (kb) 1509 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1at 1508.702 kb on - strand, within MMP_RS08000at 1508.720 kb on - strand, within MMP_RS08000at 1508.790 kb on - strand, within MMP_RS08000at 1508.791 kb on + strand, within MMP_RS08000at 1508.974 kb on - strand, within MMP_RS08000at 1509.014 kb on - strand, within MMP_RS08000at 1509.014 kb on - strand, within MMP_RS08000at 1509.015 kb on + strand, within MMP_RS08000at 1509.016 kb on - strand, within MMP_RS08000at 1509.021 kb on - strand, within MMP_RS08000at 1509.021 kb on - strand, within MMP_RS08000at 1509.237 kb on + strand, within MMP_RS08000at 1509.438 kb on + strandat 1509.449 kb on + strandat 1509.452 kb on - strandat 1509.453 kb on + strandat 1509.467 kb on + strandat 1509.502 kb on - strandat 1509.533 kb on - strandat 1509.549 kb on + strandat 1509.604 kb on + strandat 1509.604 kb on + strandat 1509.642 kb on - strandat 1509.642 kb on - strandat 1509.643 kb on + strandat 1509.668 kb on - strandat 1509.670 kb on - strandat 1509.696 kb on - strandat 1509.862 kb on + strandat 1510.260 kb on + strandat 1511.447 kb on + strandat 1511.836 kb on - strandat 1511.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,508,702 - MMP_RS08000 0.44 +0.0
1,508,720 - MMP_RS08000 0.45 +0.7
1,508,790 - MMP_RS08000 0.51 -0.4
1,508,791 + MMP_RS08000 0.51 -0.1
1,508,974 - MMP_RS08000 0.65 +1.0
1,509,014 - MMP_RS08000 0.68 -0.4
1,509,014 - MMP_RS08000 0.68 -0.1
1,509,015 + MMP_RS08000 0.68 +0.0
1,509,016 - MMP_RS08000 0.68 +0.1
1,509,021 - MMP_RS08000 0.68 +0.7
1,509,021 - MMP_RS08000 0.68 -0.3
1,509,237 + MMP_RS08000 0.85 +0.5
1,509,438 + +0.2
1,509,449 + -1.6
1,509,452 - +1.2
1,509,453 + -0.6
1,509,467 + +1.0
1,509,502 - +0.8
1,509,533 - -1.0
1,509,549 + +0.2
1,509,604 + +0.4
1,509,604 + -0.1
1,509,642 - -1.7
1,509,642 - -1.6
1,509,643 + -1.0
1,509,668 - -2.2
1,509,670 - -1.2
1,509,696 - -1.3
1,509,862 + -1.4
1,510,260 + -0.6
1,511,447 + -0.3
1,511,836 - -1.0
1,511,853 - -1.9

Or see this region's nucleotide sequence