Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06945

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06935 and MMP_RS06940 are separated by 4 nucleotidesMMP_RS06940 and MMP_RS06945 are separated by 16 nucleotidesMMP_RS06945 and MMP_RS06950 are separated by 129 nucleotidesMMP_RS06950 and MMP_RS08915 are separated by 189 nucleotides MMP_RS06935: MMP_RS06935 - protease complex subunit PrcB family protein, at 1,325,299 to 1,325,775 _RS06935 MMP_RS06940: MMP_RS06940 - polyprenyl diphosphate synthase, at 1,325,780 to 1,326,574 _RS06940 MMP_RS06945: MMP_RS06945 - methanogenesis marker protein Mmp4/MtxX, at 1,326,591 to 1,327,322 _RS06945 MMP_RS06950: MMP_RS06950 - histone family protein, at 1,327,452 to 1,327,652 _RS06950 MMP_RS08915: MMP_RS08915 - 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,327,842 to 1,328,924 _RS08915 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1325.632 kb on - strand, within MMP_RS06935at 1325.632 kb on - strand, within MMP_RS06935at 1325.668 kb on - strand, within MMP_RS06935at 1325.692 kb on + strand, within MMP_RS06935at 1325.760 kb on - strandat 1325.768 kb on - strandat 1325.859 kb on - strandat 1325.859 kb on - strandat 1325.860 kb on + strand, within MMP_RS06940at 1325.860 kb on + strand, within MMP_RS06940at 1325.877 kb on + strand, within MMP_RS06940at 1325.917 kb on - strand, within MMP_RS06940at 1326.284 kb on - strand, within MMP_RS06940at 1326.285 kb on + strand, within MMP_RS06940at 1326.334 kb on - strand, within MMP_RS06940at 1326.337 kb on - strand, within MMP_RS06940at 1326.370 kb on - strand, within MMP_RS06940at 1326.657 kb on + strandat 1326.660 kb on - strandat 1326.663 kb on + strandat 1326.734 kb on - strandat 1326.742 kb on + strandat 1326.774 kb on - strandat 1326.797 kb on + strandat 1326.797 kb on + strandat 1326.807 kb on - strandat 1326.999 kb on - strandat 1326.999 kb on - strandat 1327.023 kb on - strandat 1327.104 kb on + strandat 1327.318 kb on - strandat 1327.318 kb on - strandat 1327.319 kb on + strandat 1327.334 kb on - strandat 1327.346 kb on + strandat 1327.374 kb on + strandat 1327.376 kb on - strandat 1327.384 kb on - strandat 1327.384 kb on - strandat 1327.384 kb on - strandat 1327.384 kb on - strandat 1327.385 kb on + strandat 1327.385 kb on + strandat 1327.386 kb on - strandat 1327.387 kb on + strandat 1327.404 kb on - strandat 1327.405 kb on + strandat 1327.419 kb on - strandat 1327.422 kb on - strandat 1327.742 kb on - strandat 1327.816 kb on - strandat 1327.844 kb on + strandat 1327.961 kb on + strand, within MMP_RS08915at 1328.272 kb on + strand, within MMP_RS08915

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,325,632 - MMP_RS06935 0.70 +0.5
1,325,632 - MMP_RS06935 0.70 -0.0
1,325,668 - MMP_RS06935 0.77 +0.6
1,325,692 + MMP_RS06935 0.82 +0.0
1,325,760 - +1.2
1,325,768 - +0.6
1,325,859 - -2.0
1,325,859 - -0.2
1,325,860 + MMP_RS06940 0.10 -3.9
1,325,860 + MMP_RS06940 0.10 -1.2
1,325,877 + MMP_RS06940 0.12 -1.9
1,325,917 - MMP_RS06940 0.17 -1.7
1,326,284 - MMP_RS06940 0.63 -2.6
1,326,285 + MMP_RS06940 0.64 -1.7
1,326,334 - MMP_RS06940 0.70 -2.5
1,326,337 - MMP_RS06940 0.70 -2.4
1,326,370 - MMP_RS06940 0.74 -1.6
1,326,657 + -3.3
1,326,660 - -0.4
1,326,663 + -2.0
1,326,734 - -0.5
1,326,742 + -1.3
1,326,774 - -4.0
1,326,797 + -1.7
1,326,797 + -1.8
1,326,807 - -0.4
1,326,999 - -3.0
1,326,999 - -0.9
1,327,023 - -2.9
1,327,104 + -1.1
1,327,318 - -0.5
1,327,318 - -0.1
1,327,319 + -1.5
1,327,334 - +0.2
1,327,346 + +0.7
1,327,374 + -1.0
1,327,376 - +1.2
1,327,384 - +0.1
1,327,384 - +0.0
1,327,384 - +0.6
1,327,384 - -1.0
1,327,385 + -0.5
1,327,385 + -1.9
1,327,386 - +1.0
1,327,387 + +0.1
1,327,404 - +1.4
1,327,405 + +0.3
1,327,419 - -1.3
1,327,422 - +1.0
1,327,742 - -1.4
1,327,816 - +0.5
1,327,844 + +0.9
1,327,961 + MMP_RS08915 0.11 -2.2
1,328,272 + MMP_RS08915 0.40 -1.1

Or see this region's nucleotide sequence