Experiment: H2 McCas with 1 hour oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06405 and MMP_RS06410 are separated by 22 nucleotides MMP_RS06410 and MMP_RS06415 are separated by 41 nucleotides MMP_RS06415 and MMP_RS06420 are separated by 22 nucleotides MMP_RS06420 and MMP_RS06425 are separated by 33 nucleotides MMP_RS06425 and MMP_RS06430 are separated by 92 nucleotides
MMP_RS06405: MMP_RS06405 - 4Fe-4S binding protein, at 1,229,443 to 1,230,501
_RS06405
MMP_RS06410: MMP_RS06410 - 4Fe-4S binding protein, at 1,230,524 to 1,230,766
_RS06410
MMP_RS06415: MMP_RS06415 - protein fwdD, at 1,230,808 to 1,231,194
_RS06415
MMP_RS06420: MMP_RS06420 - formylmethanofuran dehydrogenase subunit A, at 1,231,217 to 1,232,920
_RS06420
MMP_RS06425: MMP_RS06425 - formylmethanofuran dehydrogenase subunit C, at 1,232,954 to 1,233,772
_RS06425
MMP_RS06430: MMP_RS06430 - 6-carboxytetrahydropterin synthase QueD, at 1,233,865 to 1,234,368
_RS06430
Position (kb)
1231
1232
1233 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1230.357 kb on + strand at 1230.445 kb on + strand at 1230.540 kb on - strand at 1230.541 kb on + strand at 1230.612 kb on - strand at 1230.613 kb on + strand at 1230.685 kb on + strand at 1230.959 kb on - strand at 1231.035 kb on + strand at 1231.170 kb on + strand at 1231.184 kb on + strand at 1231.649 kb on + strand at 1231.834 kb on - strand at 1232.144 kb on + strand at 1232.159 kb on + strand at 1232.374 kb on - strand at 1232.423 kb on + strand at 1232.622 kb on + strand at 1233.352 kb on + strand at 1233.708 kb on + strand at 1233.820 kb on - strand at 1233.826 kb on - strand at 1233.827 kb on + strand at 1233.827 kb on + strand at 1233.827 kb on + strand at 1233.828 kb on - strand at 1233.828 kb on - strand at 1233.829 kb on + strand at 1233.832 kb on - strand at 1233.832 kb on - strand at 1233.832 kb on - strand at 1233.833 kb on + strand at 1233.833 kb on + strand at 1233.834 kb on - strand at 1233.835 kb on + strand at 1233.837 kb on - strand at 1233.837 kb on - strand at 1233.847 kb on + strand at 1233.865 kb on + strand at 1233.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure remove 1,230,357 + -1.4 1,230,445 + -2.7 1,230,540 - -1.2 1,230,541 + -2.2 1,230,612 - -1.1 1,230,613 + -3.7 1,230,685 + -2.9 1,230,959 - -0.5 1,231,035 + -2.3 1,231,170 + -1.6 1,231,184 + -3.8 1,231,649 + -1.6 1,231,834 - -1.9 1,232,144 + -1.7 1,232,159 + -3.7 1,232,374 - -1.7 1,232,423 + -2.8 1,232,622 + -2.9 1,233,352 + -3.3 1,233,708 + -2.4 1,233,820 - +1.5 1,233,826 - -0.3 1,233,827 + +0.5 1,233,827 + +0.5 1,233,827 + +0.7 1,233,828 - -0.1 1,233,828 - +0.6 1,233,829 + +0.2 1,233,832 - -0.5 1,233,832 - +0.7 1,233,832 - -0.8 1,233,833 + +0.6 1,233,833 + +0.5 1,233,834 - -1.5 1,233,835 + -0.5 1,233,837 - +0.9 1,233,837 - +0.1 1,233,847 + +0.7 1,233,865 + +0.6 1,233,865 + -0.4
Or see this region's nucleotide sequence