Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06420

Experiment: H2 McCas with 1 hour oxygen exposure

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06405 and MMP_RS06410 are separated by 22 nucleotidesMMP_RS06410 and MMP_RS06415 are separated by 41 nucleotidesMMP_RS06415 and MMP_RS06420 are separated by 22 nucleotidesMMP_RS06420 and MMP_RS06425 are separated by 33 nucleotidesMMP_RS06425 and MMP_RS06430 are separated by 92 nucleotides MMP_RS06405: MMP_RS06405 - 4Fe-4S binding protein, at 1,229,443 to 1,230,501 _RS06405 MMP_RS06410: MMP_RS06410 - 4Fe-4S binding protein, at 1,230,524 to 1,230,766 _RS06410 MMP_RS06415: MMP_RS06415 - protein fwdD, at 1,230,808 to 1,231,194 _RS06415 MMP_RS06420: MMP_RS06420 - formylmethanofuran dehydrogenase subunit A, at 1,231,217 to 1,232,920 _RS06420 MMP_RS06425: MMP_RS06425 - formylmethanofuran dehydrogenase subunit C, at 1,232,954 to 1,233,772 _RS06425 MMP_RS06430: MMP_RS06430 - 6-carboxytetrahydropterin synthase QueD, at 1,233,865 to 1,234,368 _RS06430 Position (kb) 1231 1232 1233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1230.357 kb on + strandat 1230.445 kb on + strandat 1230.540 kb on - strandat 1230.541 kb on + strandat 1230.612 kb on - strandat 1230.613 kb on + strandat 1230.685 kb on + strandat 1230.959 kb on - strandat 1231.035 kb on + strandat 1231.170 kb on + strandat 1231.184 kb on + strandat 1231.649 kb on + strandat 1231.834 kb on - strandat 1232.144 kb on + strandat 1232.159 kb on + strandat 1232.374 kb on - strandat 1232.423 kb on + strandat 1232.622 kb on + strandat 1233.352 kb on + strandat 1233.708 kb on + strandat 1233.820 kb on - strandat 1233.826 kb on - strandat 1233.827 kb on + strandat 1233.827 kb on + strandat 1233.827 kb on + strandat 1233.828 kb on - strandat 1233.828 kb on - strandat 1233.829 kb on + strandat 1233.832 kb on - strandat 1233.832 kb on - strandat 1233.832 kb on - strandat 1233.833 kb on + strandat 1233.833 kb on + strandat 1233.834 kb on - strandat 1233.835 kb on + strandat 1233.837 kb on - strandat 1233.837 kb on - strandat 1233.847 kb on + strandat 1233.865 kb on + strandat 1233.865 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
remove
1,230,357 + -1.4
1,230,445 + -2.7
1,230,540 - -1.2
1,230,541 + -2.2
1,230,612 - -1.1
1,230,613 + -3.7
1,230,685 + -2.9
1,230,959 - -0.5
1,231,035 + -2.3
1,231,170 + -1.6
1,231,184 + -3.8
1,231,649 + -1.6
1,231,834 - -1.9
1,232,144 + -1.7
1,232,159 + -3.7
1,232,374 - -1.7
1,232,423 + -2.8
1,232,622 + -2.9
1,233,352 + -3.3
1,233,708 + -2.4
1,233,820 - +1.5
1,233,826 - -0.3
1,233,827 + +0.5
1,233,827 + +0.5
1,233,827 + +0.7
1,233,828 - -0.1
1,233,828 - +0.6
1,233,829 + +0.2
1,233,832 - -0.5
1,233,832 - +0.7
1,233,832 - -0.8
1,233,833 + +0.6
1,233,833 + +0.5
1,233,834 - -1.5
1,233,835 + -0.5
1,233,837 - +0.9
1,233,837 - +0.1
1,233,847 + +0.7
1,233,865 + +0.6
1,233,865 + -0.4

Or see this region's nucleotide sequence