Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06405

Experiment: H2 McCas with 1 hour oxygen exposure

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06395 and MMP_RS06400 are separated by 203 nucleotidesMMP_RS06400 and MMP_RS06405 are separated by 23 nucleotidesMMP_RS06405 and MMP_RS06410 are separated by 22 nucleotidesMMP_RS06410 and MMP_RS06415 are separated by 41 nucleotidesMMP_RS06415 and MMP_RS06420 are separated by 22 nucleotides MMP_RS06395: MMP_RS06395 - ThiF family adenylyltransferase, at 1,228,155 to 1,228,769 _RS06395 MMP_RS06400: MMP_RS06400 - 4Fe-4S binding protein, at 1,228,973 to 1,229,419 _RS06400 MMP_RS06405: MMP_RS06405 - 4Fe-4S binding protein, at 1,229,443 to 1,230,501 _RS06405 MMP_RS06410: MMP_RS06410 - 4Fe-4S binding protein, at 1,230,524 to 1,230,766 _RS06410 MMP_RS06415: MMP_RS06415 - protein fwdD, at 1,230,808 to 1,231,194 _RS06415 MMP_RS06420: MMP_RS06420 - formylmethanofuran dehydrogenase subunit A, at 1,231,217 to 1,232,920 _RS06420 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1228.509 kb on + strand, within MMP_RS06395at 1228.568 kb on + strand, within MMP_RS06395at 1228.603 kb on + strand, within MMP_RS06395at 1228.798 kb on + strandat 1228.837 kb on + strandat 1228.928 kb on - strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.951 kb on + strandat 1228.985 kb on + strandat 1228.985 kb on + strandat 1228.985 kb on + strandat 1228.986 kb on - strandat 1228.986 kb on - strandat 1228.987 kb on + strandat 1228.987 kb on + strandat 1228.990 kb on + strandat 1229.234 kb on - strand, within MMP_RS06400at 1229.242 kb on + strand, within MMP_RS06400at 1229.251 kb on - strand, within MMP_RS06400at 1229.439 kb on - strandat 1229.440 kb on + strandat 1230.027 kb on + strandat 1230.083 kb on + strandat 1230.357 kb on + strandat 1230.445 kb on + strandat 1230.540 kb on - strandat 1230.541 kb on + strandat 1230.612 kb on - strandat 1230.613 kb on + strandat 1230.685 kb on + strandat 1230.959 kb on - strandat 1231.035 kb on + strandat 1231.170 kb on + strandat 1231.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure
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1,228,509 + MMP_RS06395 0.58 -0.3
1,228,568 + MMP_RS06395 0.67 -1.5
1,228,603 + MMP_RS06395 0.73 -3.4
1,228,798 + +1.2
1,228,837 + +0.1
1,228,928 - -2.7
1,228,929 + -3.7
1,228,929 + -3.5
1,228,929 + -2.5
1,228,929 + -2.0
1,228,951 + -1.9
1,228,985 + -2.5
1,228,985 + -3.5
1,228,985 + -4.6
1,228,986 - -1.7
1,228,986 - -2.8
1,228,987 + -2.7
1,228,987 + -1.6
1,228,990 + -1.0
1,229,234 - MMP_RS06400 0.58 -1.7
1,229,242 + MMP_RS06400 0.60 -2.8
1,229,251 - MMP_RS06400 0.62 -2.8
1,229,439 - -1.7
1,229,440 + -1.7
1,230,027 + -1.9
1,230,083 + -2.5
1,230,357 + -1.4
1,230,445 + -2.7
1,230,540 - -1.2
1,230,541 + -2.2
1,230,612 - -1.1
1,230,613 + -3.7
1,230,685 + -2.9
1,230,959 - -0.5
1,231,035 + -2.3
1,231,170 + -1.6
1,231,184 + -3.8

Or see this region's nucleotide sequence