Experiment: H2 McCas with 1 hour oxygen exposure
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02705 and MMP_RS02710 are separated by 118 nucleotides MMP_RS02710 and MMP_RS02715 are separated by 76 nucleotides
MMP_RS02705: MMP_RS02705 - formylmethanofuran dehydrogenase subunit B, at 515,910 to 517,241
_RS02705
MMP_RS02710: MMP_RS02710 - formylmethanofuran dehydrogenase subunit B, at 517,360 to 518,697
_RS02710
MMP_RS02715: MMP_RS02715 - molybdopterin molybdotransferase MoeA, at 518,774 to 519,895
_RS02715
Position (kb)
517
518
519 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 516.466 kb on - strand, within MMP_RS02705 at 516.579 kb on + strand, within MMP_RS02705 at 516.644 kb on + strand, within MMP_RS02705 at 516.763 kb on + strand, within MMP_RS02705 at 516.879 kb on + strand, within MMP_RS02705 at 517.013 kb on + strand, within MMP_RS02705 at 517.067 kb on + strand, within MMP_RS02705 at 517.079 kb on + strand, within MMP_RS02705 at 517.100 kb on - strand, within MMP_RS02705 at 517.130 kb on + strand at 517.131 kb on - strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.135 kb on + strand at 517.210 kb on - strand at 517.239 kb on - strand at 517.282 kb on + strand at 517.337 kb on - strand at 517.338 kb on + strand at 517.378 kb on + strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.386 kb on + strand at 517.386 kb on + strand at 517.388 kb on - strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.453 kb on + strand at 517.506 kb on + strand, within MMP_RS02710 at 517.509 kb on - strand, within MMP_RS02710 at 517.518 kb on - strand, within MMP_RS02710 at 517.520 kb on - strand, within MMP_RS02710 at 517.541 kb on - strand, within MMP_RS02710 at 517.802 kb on - strand, within MMP_RS02710 at 517.803 kb on + strand, within MMP_RS02710 at 517.806 kb on - strand, within MMP_RS02710 at 517.859 kb on + strand, within MMP_RS02710 at 517.962 kb on + strand, within MMP_RS02710 at 517.973 kb on - strand, within MMP_RS02710 at 518.065 kb on + strand, within MMP_RS02710 at 518.205 kb on + strand, within MMP_RS02710 at 518.333 kb on + strand, within MMP_RS02710 at 518.333 kb on + strand, within MMP_RS02710 at 518.397 kb on + strand, within MMP_RS02710 at 518.439 kb on - strand, within MMP_RS02710 at 518.443 kb on - strand, within MMP_RS02710 at 518.443 kb on - strand, within MMP_RS02710 at 518.446 kb on + strand, within MMP_RS02710 at 518.580 kb on + strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.635 kb on + strand at 518.712 kb on + strand at 518.721 kb on - strand at 518.721 kb on - strand at 518.726 kb on - strand at 518.781 kb on - strand at 518.782 kb on + strand at 519.010 kb on - strand, within MMP_RS02715 at 519.010 kb on - strand, within MMP_RS02715 at 519.018 kb on + strand, within MMP_RS02715 at 519.037 kb on + strand, within MMP_RS02715 at 519.049 kb on - strand, within MMP_RS02715 at 519.077 kb on - strand, within MMP_RS02715 at 519.077 kb on - strand, within MMP_RS02715 at 519.078 kb on + strand, within MMP_RS02715 at 519.080 kb on + strand, within MMP_RS02715 at 519.080 kb on + strand, within MMP_RS02715 at 519.386 kb on - strand, within MMP_RS02715 at 519.410 kb on - strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.532 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 1 hour oxygen exposure remove 516,466 - MMP_RS02705 0.42 +1.1 516,579 + MMP_RS02705 0.50 +0.1 516,644 + MMP_RS02705 0.55 -0.4 516,763 + MMP_RS02705 0.64 +0.5 516,879 + MMP_RS02705 0.73 +1.0 517,013 + MMP_RS02705 0.83 +0.1 517,067 + MMP_RS02705 0.87 +0.3 517,079 + MMP_RS02705 0.88 +1.0 517,100 - MMP_RS02705 0.89 -1.2 517,130 + -0.5 517,131 - -0.7 517,132 + +0.3 517,132 + +0.1 517,132 + +1.1 517,132 + -0.3 517,132 + +0.2 517,134 - +0.6 517,134 - +0.6 517,134 - -1.4 517,135 + +0.1 517,210 - +0.3 517,239 - +0.4 517,282 + +0.3 517,337 - -0.3 517,338 + +0.6 517,378 + +0.2 517,385 - +0.6 517,385 - +0.4 517,385 - +0.5 517,386 + -0.2 517,386 + +0.1 517,388 - +0.8 517,389 + -0.0 517,389 + +0.6 517,389 + -0.7 517,433 + +0.7 517,433 + -0.2 517,433 + +0.1 517,453 + -0.5 517,506 + MMP_RS02710 0.11 +0.5 517,509 - MMP_RS02710 0.11 +0.4 517,518 - MMP_RS02710 0.12 -0.1 517,520 - MMP_RS02710 0.12 +0.2 517,541 - MMP_RS02710 0.14 +0.3 517,802 - MMP_RS02710 0.33 +0.9 517,803 + MMP_RS02710 0.33 +0.5 517,806 - MMP_RS02710 0.33 +0.8 517,859 + MMP_RS02710 0.37 +0.4 517,962 + MMP_RS02710 0.45 -0.6 517,973 - MMP_RS02710 0.46 -1.5 518,065 + MMP_RS02710 0.53 +0.5 518,205 + MMP_RS02710 0.63 +1.5 518,333 + MMP_RS02710 0.73 +1.2 518,333 + MMP_RS02710 0.73 -1.9 518,397 + MMP_RS02710 0.78 -2.3 518,439 - MMP_RS02710 0.81 -0.9 518,443 - MMP_RS02710 0.81 -0.0 518,443 - MMP_RS02710 0.81 -0.3 518,446 + MMP_RS02710 0.81 +0.4 518,580 + -1.9 518,582 + +0.5 518,582 + -0.0 518,635 + +0.1 518,712 + -0.2 518,721 - +0.2 518,721 - -0.5 518,726 - +0.2 518,781 - +0.5 518,782 + +0.0 519,010 - MMP_RS02715 0.21 -0.3 519,010 - MMP_RS02715 0.21 +0.7 519,018 + MMP_RS02715 0.22 -0.1 519,037 + MMP_RS02715 0.23 +1.4 519,049 - MMP_RS02715 0.25 +0.6 519,077 - MMP_RS02715 0.27 +0.2 519,077 - MMP_RS02715 0.27 -0.5 519,078 + MMP_RS02715 0.27 -0.6 519,080 + MMP_RS02715 0.27 -0.2 519,080 + MMP_RS02715 0.27 -0.4 519,386 - MMP_RS02715 0.55 -0.2 519,410 - MMP_RS02715 0.57 +1.8 519,468 + MMP_RS02715 0.62 +0.5 519,468 + MMP_RS02715 0.62 -0.1 519,532 - MMP_RS02715 0.68 -1.8 519,593 - MMP_RS02715 0.73 +0.7 519,593 - MMP_RS02715 0.73 +0.2
Or see this region's nucleotide sequence