Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14430

Experiment: marine broth 37C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth 37C
1,497,912	+		PGA1_c14410	0.67	+0.4
1,497,920	-		PGA1_c14410	0.68	+1.3
1,497,922	+		PGA1_c14410	0.68	-0.1
1,497,930	+		PGA1_c14410	0.69	-0.8
1,497,938	-		PGA1_c14410	0.70	+0.5
1,497,953	-		PGA1_c14410	0.72	-0.1
1,498,009	-		PGA1_c14410	0.78	+0.6
1,498,031	+		PGA1_c14410	0.80	-1.2
1,498,051	+		PGA1_c14410	0.83	+1.1
1,498,055	+		PGA1_c14410	0.83	+0.7
1,498,055	+		PGA1_c14410	0.83	+0.6
1,498,073	-		PGA1_c14410	0.85	+0.2
1,498,073	-		PGA1_c14410	0.85	-0.7
1,498,101	+		PGA1_c14410	0.88	+0.6
1,498,101	+		PGA1_c14410	0.88	-1.0
1,498,101	+		PGA1_c14410	0.88	-1.1
1,498,101	+		PGA1_c14410	0.88	-0.8
1,498,101	+		PGA1_c14410	0.88	-0.1
1,498,101	+		PGA1_c14410	0.88	-0.8
1,498,101	+		PGA1_c14410	0.88	+0.5
1,498,101	+		PGA1_c14410	0.88	+0.0
1,498,101	+		PGA1_c14410	0.88	-1.1
1,498,101	+		PGA1_c14410	0.88	-0.4
1,498,101	+		PGA1_c14410	0.88	-0.9
1,498,101	+		PGA1_c14410	0.88	-1.1
1,498,101	+		PGA1_c14410	0.88	-2.8
1,498,101	+		PGA1_c14410	0.88	-0.4
1,498,101	+		PGA1_c14410	0.88	+0.8
1,498,101	+		PGA1_c14410	0.88	+0.0
1,498,101	+		PGA1_c14410	0.88	-0.6
1,498,109	-		PGA1_c14410	0.89	-2.6
1,498,109	-		PGA1_c14410	0.89	-0.2
1,498,109	-		PGA1_c14410	0.89	-1.8
1,498,109	-		PGA1_c14410	0.89	-3.8
1,498,109	-		PGA1_c14410	0.89	+0.2
1,498,109	-		PGA1_c14410	0.89	-1.1
1,498,109	-		PGA1_c14410	0.89	-0.1
1,498,132	-				+1.0
1,498,137	+				+0.2
1,498,289	-		PGA1_c14420	0.15	-0.8
1,498,344	-		PGA1_c14420	0.24	-0.7
1,498,370	+		PGA1_c14420	0.28	+0.6
1,498,370	+		PGA1_c14420	0.28	-2.8
1,498,490	+		PGA1_c14420	0.47	+0.5
1,498,531	+		PGA1_c14420	0.54	+1.0
1,498,557	+		PGA1_c14420	0.58	-1.6
1,498,565	-		PGA1_c14420	0.60	-1.1
1,498,596	+		PGA1_c14420	0.65	+0.3
1,498,609	-		PGA1_c14420	0.67	-0.7
1,498,609	-		PGA1_c14420	0.67	+1.7
1,498,667	+		PGA1_c14420	0.76	+0.9
1,498,764	+				-1.3
1,498,772	+				-0.8
1,498,788	-				-0.3
1,498,820	+				-0.9
1,498,828	-				+1.1
1,498,828	-				+0.4
1,498,895	+				+1.4
1,498,902	-				-1.2
1,498,903	-				-1.2
1,498,903	-				-1.4
1,498,982	+		PGA1_c14430	0.10	-1.8
1,498,990	+		PGA1_c14430	0.11	+0.3
1,498,990	+		PGA1_c14430	0.11	+1.6
1,498,999	-		PGA1_c14430	0.11	-0.3
1,499,077	+		PGA1_c14430	0.17	-0.5
1,499,130	-		PGA1_c14430	0.21	+1.3
1,499,152	-		PGA1_c14430	0.23	-1.3
1,499,182	+		PGA1_c14430	0.25	-2.4
1,499,200	+		PGA1_c14430	0.26	+0.3
1,499,200	+		PGA1_c14430	0.26	-1.8
1,499,292	+		PGA1_c14430	0.33	-1.8
1,499,298	-		PGA1_c14430	0.34	-1.4
1,499,339	+		PGA1_c14430	0.37	+0.1
1,499,339	+		PGA1_c14430	0.37	-0.3
1,499,347	-		PGA1_c14430	0.37	-1.4
1,499,347	-		PGA1_c14430	0.37	-1.0
1,499,347	-		PGA1_c14430	0.37	+0.5
1,499,523	-		PGA1_c14430	0.50	-2.6
1,499,563	+		PGA1_c14430	0.53	-0.4
1,499,612	-		PGA1_c14430	0.57	+0.7
1,499,617	+		PGA1_c14430	0.57	-0.5
1,499,635	-		PGA1_c14430	0.59	-1.8
1,499,653	+		PGA1_c14430	0.60	-0.5
1,499,684	+		PGA1_c14430	0.62	-1.0
1,499,749	+		PGA1_c14430	0.67	-1.3
1,499,765	+		PGA1_c14430	0.68	+0.5
1,499,888	+		PGA1_c14430	0.78	+0.5
1,499,895	-		PGA1_c14430	0.78	-1.0
1,499,904	-		PGA1_c14430	0.79	+0.1
1,499,945	+		PGA1_c14430	0.82	-2.6
1,499,988	+		PGA1_c14430	0.85	+0.1
1,500,001	+		PGA1_c14430	0.86	-0.7
1,500,009	-		PGA1_c14430	0.87	+0.3
1,500,035	-		PGA1_c14430	0.88	+0.3
1,500,047	-		PGA1_c14430	0.89	-0.5
1,500,115	+				+0.1
1,500,117	-				-0.8
1,500,123	-				+0.5
1,500,129	+				+0.7
1,500,154	-				-0.1
1,500,197	+				+0.0
1,500,197	+				-1.8
1,500,202	+				-0.7
1,500,205	-				-1.8
1,500,205	-				-1.4
1,500,205	-				+1.3
1,500,207	+				+0.9
1,500,242	-				+0.2
1,500,279	+				-0.4
1,500,279	+				-0.0
1,500,279	+				+0.7
1,500,287	-				-0.5
1,500,317	-				-0.5
1,500,330	+				-0.5
1,500,363	+				+1.4
1,500,364	-				+0.5
1,500,368	+				+0.8
1,500,431	+				+1.7
1,500,431	+				+0.5
1,500,431	+				-2.7
1,500,441	+				-0.8
1,500,441	+				-1.1
1,500,441	+				+0.0
1,500,444	-				-0.8
1,500,449	-				-0.5
1,500,452	+				-0.4
1,500,452	+				-1.3
1,500,457	+				-3.1
1,500,457	+				+0.4
1,500,457	+				+0.1
1,500,468	+				-0.5
1,500,476	-				-0.3
1,500,596	+				+0.4
1,500,621	-				-0.3
1,500,623	+				-0.3
1,500,651	+		PGA1_c14440	0.12	+1.1
1,500,651	+		PGA1_c14440	0.12	+0.4
1,500,663	+		PGA1_c14440	0.14	+1.2
1,500,663	+		PGA1_c14440	0.14	+1.2
1,500,663	+		PGA1_c14440	0.14	-0.0
1,500,670	+		PGA1_c14440	0.15	-1.0
1,500,670	+		PGA1_c14440	0.15	+0.5
1,500,670	+		PGA1_c14440	0.15	+0.7
1,500,670	+		PGA1_c14440	0.15	-0.6
1,500,671	-		PGA1_c14440	0.15	-0.5
1,500,675	+		PGA1_c14440	0.15	+1.3
1,500,678	-		PGA1_c14440	0.16	-0.4
1,500,678	-		PGA1_c14440	0.16	+0.6
1,500,680	+		PGA1_c14440	0.16	+0.5
1,500,745	+		PGA1_c14440	0.24	-1.1
1,500,753	-		PGA1_c14440	0.25	+0.3
1,500,766	-		PGA1_c14440	0.27	+0.4
1,500,779	-		PGA1_c14440	0.28	-0.3
1,500,829	+		PGA1_c14440	0.35	+0.2
1,500,881	+		PGA1_c14440	0.41	+0.6
1,500,888	+		PGA1_c14440	0.42	-0.6
1,500,900	+		PGA1_c14440	0.44	-0.9
1,500,918	-		PGA1_c14440	0.46	+1.5
1,500,962	-		PGA1_c14440	0.52	-1.3
1,501,003	+		PGA1_c14440	0.57	-0.6
1,501,018	+		PGA1_c14440	0.59	-1.6
1,501,018	+		PGA1_c14440	0.59	+0.3
1,501,038	+		PGA1_c14440	0.61	+0.4
1,501,063	+		PGA1_c14440	0.64	+0.2
1,501,151	+		PGA1_c14440	0.76	+0.3
1,501,159	-		PGA1_c14440	0.77	-0.3
1,501,159	-		PGA1_c14440	0.77	-1.2
1,501,159	-		PGA1_c14440	0.77	+1.3
1,501,159	-		PGA1_c14440	0.77	-0.8