Experiment: LB in EcoFAB_3.5mL with sand
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26850 and BWI76_RS26855 are separated by 20 nucleotides BWI76_RS26855 and BWI76_RS26860 overlap by 10 nucleotides
BWI76_RS26850: BWI76_RS26850 - cellulose synthase catalytic subunit (UDP-forming), at 5,569,316 to 5,571,427
_RS26850
BWI76_RS26855: BWI76_RS26855 - cellulose synthase operon protein YhjQ, at 5,571,448 to 5,572,251
_RS26855
BWI76_RS26860: BWI76_RS26860 - hypothetical protein, at 5,572,242 to 5,572,799
_RS26860
Position (kb)
5571
5572
5573 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5570.573 kb on + strand, within BWI76_RS26850 at 5570.624 kb on - strand, within BWI76_RS26850 at 5570.761 kb on + strand, within BWI76_RS26850 at 5570.798 kb on + strand, within BWI76_RS26850 at 5570.838 kb on - strand, within BWI76_RS26850 at 5570.881 kb on - strand, within BWI76_RS26850 at 5570.884 kb on + strand, within BWI76_RS26850 at 5571.097 kb on + strand, within BWI76_RS26850 at 5571.114 kb on + strand, within BWI76_RS26850 at 5571.127 kb on + strand, within BWI76_RS26850 at 5571.145 kb on - strand, within BWI76_RS26850 at 5571.155 kb on + strand, within BWI76_RS26850 at 5571.175 kb on - strand, within BWI76_RS26850 at 5571.304 kb on + strand at 5571.348 kb on - strand at 5571.371 kb on - strand at 5571.453 kb on + strand at 5571.453 kb on + strand at 5571.453 kb on + strand at 5571.461 kb on - strand at 5571.461 kb on - strand at 5571.461 kb on - strand at 5571.472 kb on + strand at 5571.480 kb on - strand at 5571.480 kb on - strand at 5571.480 kb on - strand at 5571.481 kb on - strand at 5571.583 kb on + strand, within BWI76_RS26855 at 5571.601 kb on - strand, within BWI76_RS26855 at 5571.625 kb on + strand, within BWI76_RS26855 at 5571.703 kb on + strand, within BWI76_RS26855 at 5571.732 kb on + strand, within BWI76_RS26855 at 5571.744 kb on + strand, within BWI76_RS26855 at 5571.868 kb on - strand, within BWI76_RS26855 at 5571.952 kb on + strand, within BWI76_RS26855 at 5572.052 kb on - strand, within BWI76_RS26855 at 5572.179 kb on - strand at 5572.194 kb on + strand at 5572.204 kb on + strand at 5572.240 kb on + strand at 5572.308 kb on - strand, within BWI76_RS26860 at 5572.337 kb on - strand, within BWI76_RS26860 at 5572.349 kb on - strand, within BWI76_RS26860 at 5572.398 kb on - strand, within BWI76_RS26860 at 5572.485 kb on + strand, within BWI76_RS26860 at 5572.524 kb on + strand, within BWI76_RS26860 at 5572.554 kb on - strand, within BWI76_RS26860 at 5572.558 kb on - strand, within BWI76_RS26860 at 5572.558 kb on - strand, within BWI76_RS26860 at 5572.561 kb on + strand, within BWI76_RS26860 at 5572.576 kb on + strand, within BWI76_RS26860 at 5572.608 kb on - strand, within BWI76_RS26860 at 5572.608 kb on - strand, within BWI76_RS26860 at 5572.611 kb on + strand, within BWI76_RS26860 at 5572.619 kb on + strand, within BWI76_RS26860 at 5572.621 kb on + strand, within BWI76_RS26860 at 5572.621 kb on + strand, within BWI76_RS26860 at 5572.621 kb on + strand, within BWI76_RS26860 at 5572.621 kb on + strand at 5572.627 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.629 kb on - strand, within BWI76_RS26860 at 5572.641 kb on - strand, within BWI76_RS26860 at 5572.656 kb on + strand, within BWI76_RS26860 at 5572.656 kb on + strand at 5572.664 kb on - strand, within BWI76_RS26860 at 5572.669 kb on + strand, within BWI76_RS26860 at 5572.677 kb on - strand, within BWI76_RS26860 at 5572.685 kb on + strand, within BWI76_RS26860 at 5572.693 kb on - strand, within BWI76_RS26860 at 5572.693 kb on - strand, within BWI76_RS26860 at 5572.693 kb on - strand, within BWI76_RS26860 at 5572.698 kb on - strand, within BWI76_RS26860 at 5572.718 kb on + strand, within BWI76_RS26860 at 5572.718 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.723 kb on + strand, within BWI76_RS26860 at 5572.724 kb on - strand, within BWI76_RS26860 at 5572.726 kb on - strand, within BWI76_RS26860 at 5572.731 kb on - strand, within BWI76_RS26860 at 5572.731 kb on - strand, within BWI76_RS26860 at 5572.731 kb on - strand, within BWI76_RS26860 at 5572.739 kb on + strand, within BWI76_RS26860 at 5572.739 kb on + strand, within BWI76_RS26860 at 5572.774 kb on - strand at 5572.902 kb on + strand at 5572.902 kb on + strand at 5572.902 kb on + strand at 5572.911 kb on - strand at 5572.928 kb on + strand at 5572.934 kb on - strand at 5572.936 kb on - strand at 5572.956 kb on + strand at 5572.956 kb on + strand at 5572.964 kb on - strand at 5572.969 kb on - strand at 5572.987 kb on - strand at 5573.056 kb on - strand at 5573.059 kb on + strand at 5573.063 kb on + strand at 5573.071 kb on - strand at 5573.073 kb on + strand at 5573.082 kb on + strand at 5573.082 kb on + strand at 5573.118 kb on + strand at 5573.126 kb on - strand at 5573.135 kb on - strand at 5573.138 kb on + strand at 5573.145 kb on + strand at 5573.148 kb on - strand at 5573.153 kb on - strand at 5573.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL with sand remove 5,570,573 + BWI76_RS26850 0.60 +1.3 5,570,624 - BWI76_RS26850 0.62 -0.6 5,570,761 + BWI76_RS26850 0.68 -1.9 5,570,798 + BWI76_RS26850 0.70 -0.8 5,570,838 - BWI76_RS26850 0.72 +0.0 5,570,881 - BWI76_RS26850 0.74 -0.7 5,570,884 + BWI76_RS26850 0.74 -1.7 5,571,097 + BWI76_RS26850 0.84 -1.7 5,571,114 + BWI76_RS26850 0.85 -1.4 5,571,127 + BWI76_RS26850 0.86 -0.7 5,571,145 - BWI76_RS26850 0.87 -1.7 5,571,155 + BWI76_RS26850 0.87 +0.6 5,571,175 - BWI76_RS26850 0.88 -0.7 5,571,304 + -0.5 5,571,348 - -1.5 5,571,371 - -0.5 5,571,453 + -0.7 5,571,453 + -0.8 5,571,453 + -0.1 5,571,461 - -0.8 5,571,461 - +0.2 5,571,461 - -0.4 5,571,472 + -0.5 5,571,480 - +0.6 5,571,480 - -0.8 5,571,480 - +2.6 5,571,481 - +1.0 5,571,583 + BWI76_RS26855 0.17 -1.8 5,571,601 - BWI76_RS26855 0.19 -2.1 5,571,625 + BWI76_RS26855 0.22 -1.9 5,571,703 + BWI76_RS26855 0.32 -1.3 5,571,732 + BWI76_RS26855 0.35 -1.0 5,571,744 + BWI76_RS26855 0.37 -1.4 5,571,868 - BWI76_RS26855 0.52 -0.2 5,571,952 + BWI76_RS26855 0.63 -0.4 5,572,052 - BWI76_RS26855 0.75 +0.1 5,572,179 - -0.6 5,572,194 + -0.3 5,572,204 + -0.4 5,572,240 + -0.3 5,572,308 - BWI76_RS26860 0.12 -1.1 5,572,337 - BWI76_RS26860 0.17 -0.2 5,572,349 - BWI76_RS26860 0.19 -0.2 5,572,398 - BWI76_RS26860 0.28 -0.5 5,572,485 + BWI76_RS26860 0.44 -1.1 5,572,524 + BWI76_RS26860 0.51 +0.6 5,572,554 - BWI76_RS26860 0.56 +0.8 5,572,558 - BWI76_RS26860 0.57 -0.5 5,572,558 - BWI76_RS26860 0.57 -0.5 5,572,561 + BWI76_RS26860 0.57 +0.1 5,572,576 + BWI76_RS26860 0.60 -0.1 5,572,608 - BWI76_RS26860 0.66 -0.0 5,572,608 - BWI76_RS26860 0.66 -0.9 5,572,611 + BWI76_RS26860 0.66 -1.4 5,572,619 + BWI76_RS26860 0.68 -0.8 5,572,621 + BWI76_RS26860 0.68 -0.5 5,572,621 + BWI76_RS26860 0.68 -0.1 5,572,621 + BWI76_RS26860 0.68 -0.1 5,572,621 + +0.4 5,572,627 - BWI76_RS26860 0.69 -0.7 5,572,629 - BWI76_RS26860 0.69 +2.6 5,572,629 - BWI76_RS26860 0.69 -0.6 5,572,629 - BWI76_RS26860 0.69 -0.3 5,572,629 - BWI76_RS26860 0.69 -0.9 5,572,629 - BWI76_RS26860 0.69 -0.2 5,572,629 - BWI76_RS26860 0.69 -1.0 5,572,629 - BWI76_RS26860 0.69 -0.7 5,572,629 - BWI76_RS26860 0.69 -1.8 5,572,641 - BWI76_RS26860 0.72 +0.2 5,572,656 + BWI76_RS26860 0.74 -0.5 5,572,656 + -0.3 5,572,664 - BWI76_RS26860 0.76 -0.9 5,572,669 + BWI76_RS26860 0.77 -1.7 5,572,677 - BWI76_RS26860 0.78 -0.7 5,572,685 + BWI76_RS26860 0.79 +0.2 5,572,693 - BWI76_RS26860 0.81 -0.5 5,572,693 - BWI76_RS26860 0.81 -2.1 5,572,693 - BWI76_RS26860 0.81 -2.4 5,572,698 - BWI76_RS26860 0.82 +0.6 5,572,718 + BWI76_RS26860 0.85 -1.2 5,572,718 + BWI76_RS26860 0.85 -0.8 5,572,723 + BWI76_RS26860 0.86 -0.4 5,572,723 + BWI76_RS26860 0.86 +1.2 5,572,723 + BWI76_RS26860 0.86 +0.6 5,572,723 + BWI76_RS26860 0.86 -0.4 5,572,723 + BWI76_RS26860 0.86 +0.5 5,572,723 + BWI76_RS26860 0.86 -1.2 5,572,724 - BWI76_RS26860 0.86 -0.4 5,572,726 - BWI76_RS26860 0.87 -0.7 5,572,731 - BWI76_RS26860 0.88 -0.1 5,572,731 - BWI76_RS26860 0.88 -1.0 5,572,731 - BWI76_RS26860 0.88 -1.3 5,572,739 + BWI76_RS26860 0.89 -0.7 5,572,739 + BWI76_RS26860 0.89 -1.4 5,572,774 - -1.7 5,572,902 + -0.5 5,572,902 + +0.2 5,572,902 + -0.2 5,572,911 - +2.4 5,572,928 + -1.1 5,572,934 - +2.3 5,572,936 - +0.9 5,572,956 + +2.2 5,572,956 + -0.9 5,572,964 - +1.8 5,572,969 - +0.3 5,572,987 - -0.7 5,573,056 - +0.7 5,573,059 + +0.8 5,573,063 + +1.5 5,573,071 - +1.6 5,573,073 + +0.6 5,573,082 + +1.6 5,573,082 + +0.5 5,573,118 + +0.2 5,573,126 - +1.5 5,573,135 - -0.0 5,573,138 + +2.7 5,573,145 + +0.8 5,573,148 - +0.5 5,573,153 - +0.4 5,573,156 - -1.2
Or see this region's nucleotide sequence