Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26855

Experiment: LB in EcoFAB_3.5mL with sand

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26850 and BWI76_RS26855 are separated by 20 nucleotidesBWI76_RS26855 and BWI76_RS26860 overlap by 10 nucleotides BWI76_RS26850: BWI76_RS26850 - cellulose synthase catalytic subunit (UDP-forming), at 5,569,316 to 5,571,427 _RS26850 BWI76_RS26855: BWI76_RS26855 - cellulose synthase operon protein YhjQ, at 5,571,448 to 5,572,251 _RS26855 BWI76_RS26860: BWI76_RS26860 - hypothetical protein, at 5,572,242 to 5,572,799 _RS26860 Position (kb) 5571 5572 5573Strain fitness (log2 ratio) -2 -1 0 1 2at 5570.573 kb on + strand, within BWI76_RS26850at 5570.624 kb on - strand, within BWI76_RS26850at 5570.761 kb on + strand, within BWI76_RS26850at 5570.798 kb on + strand, within BWI76_RS26850at 5570.838 kb on - strand, within BWI76_RS26850at 5570.881 kb on - strand, within BWI76_RS26850at 5570.884 kb on + strand, within BWI76_RS26850at 5571.097 kb on + strand, within BWI76_RS26850at 5571.114 kb on + strand, within BWI76_RS26850at 5571.127 kb on + strand, within BWI76_RS26850at 5571.145 kb on - strand, within BWI76_RS26850at 5571.155 kb on + strand, within BWI76_RS26850at 5571.175 kb on - strand, within BWI76_RS26850at 5571.304 kb on + strandat 5571.348 kb on - strandat 5571.371 kb on - strandat 5571.453 kb on + strandat 5571.453 kb on + strandat 5571.453 kb on + strandat 5571.461 kb on - strandat 5571.461 kb on - strandat 5571.461 kb on - strandat 5571.472 kb on + strandat 5571.480 kb on - strandat 5571.480 kb on - strandat 5571.480 kb on - strandat 5571.481 kb on - strandat 5571.583 kb on + strand, within BWI76_RS26855at 5571.601 kb on - strand, within BWI76_RS26855at 5571.625 kb on + strand, within BWI76_RS26855at 5571.703 kb on + strand, within BWI76_RS26855at 5571.732 kb on + strand, within BWI76_RS26855at 5571.744 kb on + strand, within BWI76_RS26855at 5571.868 kb on - strand, within BWI76_RS26855at 5571.952 kb on + strand, within BWI76_RS26855at 5572.052 kb on - strand, within BWI76_RS26855at 5572.179 kb on - strandat 5572.194 kb on + strandat 5572.204 kb on + strandat 5572.240 kb on + strandat 5572.308 kb on - strand, within BWI76_RS26860at 5572.337 kb on - strand, within BWI76_RS26860at 5572.349 kb on - strand, within BWI76_RS26860at 5572.398 kb on - strand, within BWI76_RS26860at 5572.485 kb on + strand, within BWI76_RS26860at 5572.524 kb on + strand, within BWI76_RS26860at 5572.554 kb on - strand, within BWI76_RS26860at 5572.558 kb on - strand, within BWI76_RS26860at 5572.558 kb on - strand, within BWI76_RS26860at 5572.561 kb on + strand, within BWI76_RS26860at 5572.576 kb on + strand, within BWI76_RS26860at 5572.608 kb on - strand, within BWI76_RS26860at 5572.608 kb on - strand, within BWI76_RS26860at 5572.611 kb on + strand, within BWI76_RS26860at 5572.619 kb on + strand, within BWI76_RS26860at 5572.621 kb on + strand, within BWI76_RS26860at 5572.621 kb on + strand, within BWI76_RS26860at 5572.621 kb on + strand, within BWI76_RS26860at 5572.621 kb on + strandat 5572.627 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.629 kb on - strand, within BWI76_RS26860at 5572.641 kb on - strand, within BWI76_RS26860at 5572.656 kb on + strand, within BWI76_RS26860at 5572.656 kb on + strandat 5572.664 kb on - strand, within BWI76_RS26860at 5572.669 kb on + strand, within BWI76_RS26860at 5572.677 kb on - strand, within BWI76_RS26860at 5572.685 kb on + strand, within BWI76_RS26860at 5572.693 kb on - strand, within BWI76_RS26860at 5572.693 kb on - strand, within BWI76_RS26860at 5572.693 kb on - strand, within BWI76_RS26860at 5572.698 kb on - strand, within BWI76_RS26860at 5572.718 kb on + strand, within BWI76_RS26860at 5572.718 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.723 kb on + strand, within BWI76_RS26860at 5572.724 kb on - strand, within BWI76_RS26860at 5572.726 kb on - strand, within BWI76_RS26860at 5572.731 kb on - strand, within BWI76_RS26860at 5572.731 kb on - strand, within BWI76_RS26860at 5572.731 kb on - strand, within BWI76_RS26860at 5572.739 kb on + strand, within BWI76_RS26860at 5572.739 kb on + strand, within BWI76_RS26860at 5572.774 kb on - strandat 5572.902 kb on + strandat 5572.902 kb on + strandat 5572.902 kb on + strandat 5572.911 kb on - strandat 5572.928 kb on + strandat 5572.934 kb on - strandat 5572.936 kb on - strandat 5572.956 kb on + strandat 5572.956 kb on + strandat 5572.964 kb on - strandat 5572.969 kb on - strandat 5572.987 kb on - strandat 5573.056 kb on - strandat 5573.059 kb on + strandat 5573.063 kb on + strandat 5573.071 kb on - strandat 5573.073 kb on + strandat 5573.082 kb on + strandat 5573.082 kb on + strandat 5573.118 kb on + strandat 5573.126 kb on - strandat 5573.135 kb on - strandat 5573.138 kb on + strandat 5573.145 kb on + strandat 5573.148 kb on - strandat 5573.153 kb on - strandat 5573.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL with sand
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5,570,573 + BWI76_RS26850 0.60 +1.3
5,570,624 - BWI76_RS26850 0.62 -0.6
5,570,761 + BWI76_RS26850 0.68 -1.9
5,570,798 + BWI76_RS26850 0.70 -0.8
5,570,838 - BWI76_RS26850 0.72 +0.0
5,570,881 - BWI76_RS26850 0.74 -0.7
5,570,884 + BWI76_RS26850 0.74 -1.7
5,571,097 + BWI76_RS26850 0.84 -1.7
5,571,114 + BWI76_RS26850 0.85 -1.4
5,571,127 + BWI76_RS26850 0.86 -0.7
5,571,145 - BWI76_RS26850 0.87 -1.7
5,571,155 + BWI76_RS26850 0.87 +0.6
5,571,175 - BWI76_RS26850 0.88 -0.7
5,571,304 + -0.5
5,571,348 - -1.5
5,571,371 - -0.5
5,571,453 + -0.7
5,571,453 + -0.8
5,571,453 + -0.1
5,571,461 - -0.8
5,571,461 - +0.2
5,571,461 - -0.4
5,571,472 + -0.5
5,571,480 - +0.6
5,571,480 - -0.8
5,571,480 - +2.6
5,571,481 - +1.0
5,571,583 + BWI76_RS26855 0.17 -1.8
5,571,601 - BWI76_RS26855 0.19 -2.1
5,571,625 + BWI76_RS26855 0.22 -1.9
5,571,703 + BWI76_RS26855 0.32 -1.3
5,571,732 + BWI76_RS26855 0.35 -1.0
5,571,744 + BWI76_RS26855 0.37 -1.4
5,571,868 - BWI76_RS26855 0.52 -0.2
5,571,952 + BWI76_RS26855 0.63 -0.4
5,572,052 - BWI76_RS26855 0.75 +0.1
5,572,179 - -0.6
5,572,194 + -0.3
5,572,204 + -0.4
5,572,240 + -0.3
5,572,308 - BWI76_RS26860 0.12 -1.1
5,572,337 - BWI76_RS26860 0.17 -0.2
5,572,349 - BWI76_RS26860 0.19 -0.2
5,572,398 - BWI76_RS26860 0.28 -0.5
5,572,485 + BWI76_RS26860 0.44 -1.1
5,572,524 + BWI76_RS26860 0.51 +0.6
5,572,554 - BWI76_RS26860 0.56 +0.8
5,572,558 - BWI76_RS26860 0.57 -0.5
5,572,558 - BWI76_RS26860 0.57 -0.5
5,572,561 + BWI76_RS26860 0.57 +0.1
5,572,576 + BWI76_RS26860 0.60 -0.1
5,572,608 - BWI76_RS26860 0.66 -0.0
5,572,608 - BWI76_RS26860 0.66 -0.9
5,572,611 + BWI76_RS26860 0.66 -1.4
5,572,619 + BWI76_RS26860 0.68 -0.8
5,572,621 + BWI76_RS26860 0.68 -0.5
5,572,621 + BWI76_RS26860 0.68 -0.1
5,572,621 + BWI76_RS26860 0.68 -0.1
5,572,621 + +0.4
5,572,627 - BWI76_RS26860 0.69 -0.7
5,572,629 - BWI76_RS26860 0.69 +2.6
5,572,629 - BWI76_RS26860 0.69 -0.6
5,572,629 - BWI76_RS26860 0.69 -0.3
5,572,629 - BWI76_RS26860 0.69 -0.9
5,572,629 - BWI76_RS26860 0.69 -0.2
5,572,629 - BWI76_RS26860 0.69 -1.0
5,572,629 - BWI76_RS26860 0.69 -0.7
5,572,629 - BWI76_RS26860 0.69 -1.8
5,572,641 - BWI76_RS26860 0.72 +0.2
5,572,656 + BWI76_RS26860 0.74 -0.5
5,572,656 + -0.3
5,572,664 - BWI76_RS26860 0.76 -0.9
5,572,669 + BWI76_RS26860 0.77 -1.7
5,572,677 - BWI76_RS26860 0.78 -0.7
5,572,685 + BWI76_RS26860 0.79 +0.2
5,572,693 - BWI76_RS26860 0.81 -0.5
5,572,693 - BWI76_RS26860 0.81 -2.1
5,572,693 - BWI76_RS26860 0.81 -2.4
5,572,698 - BWI76_RS26860 0.82 +0.6
5,572,718 + BWI76_RS26860 0.85 -1.2
5,572,718 + BWI76_RS26860 0.85 -0.8
5,572,723 + BWI76_RS26860 0.86 -0.4
5,572,723 + BWI76_RS26860 0.86 +1.2
5,572,723 + BWI76_RS26860 0.86 +0.6
5,572,723 + BWI76_RS26860 0.86 -0.4
5,572,723 + BWI76_RS26860 0.86 +0.5
5,572,723 + BWI76_RS26860 0.86 -1.2
5,572,724 - BWI76_RS26860 0.86 -0.4
5,572,726 - BWI76_RS26860 0.87 -0.7
5,572,731 - BWI76_RS26860 0.88 -0.1
5,572,731 - BWI76_RS26860 0.88 -1.0
5,572,731 - BWI76_RS26860 0.88 -1.3
5,572,739 + BWI76_RS26860 0.89 -0.7
5,572,739 + BWI76_RS26860 0.89 -1.4
5,572,774 - -1.7
5,572,902 + -0.5
5,572,902 + +0.2
5,572,902 + -0.2
5,572,911 - +2.4
5,572,928 + -1.1
5,572,934 - +2.3
5,572,936 - +0.9
5,572,956 + +2.2
5,572,956 + -0.9
5,572,964 - +1.8
5,572,969 - +0.3
5,572,987 - -0.7
5,573,056 - +0.7
5,573,059 + +0.8
5,573,063 + +1.5
5,573,071 - +1.6
5,573,073 + +0.6
5,573,082 + +1.6
5,573,082 + +0.5
5,573,118 + +0.2
5,573,126 - +1.5
5,573,135 - -0.0
5,573,138 + +2.7
5,573,145 + +0.8
5,573,148 - +0.5
5,573,153 - +0.4
5,573,156 - -1.2

Or see this region's nucleotide sequence