Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26845

Experiment: LB in EcoFAB_3.5mL with sand

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26840 and BWI76_RS26845 overlap by 4 nucleotidesBWI76_RS26845 and BWI76_RS26850 overlap by 4 nucleotides BWI76_RS26840: BWI76_RS26840 - cellulose synthase, at 5,562,868 to 5,566,920 _RS26840 BWI76_RS26845: BWI76_RS26845 - cellulose synthase regulator BcsB, at 5,566,917 to 5,569,319 _RS26845 BWI76_RS26850: BWI76_RS26850 - cellulose synthase catalytic subunit (UDP-forming), at 5,569,316 to 5,571,427 _RS26850 Position (kb) 5566 5567 5568 5569 5570Strain fitness (log2 ratio) -2 -1 0 1 2at 5565.968 kb on + strand, within BWI76_RS26840at 5565.973 kb on + strand, within BWI76_RS26840at 5565.981 kb on - strand, within BWI76_RS26840at 5566.046 kb on - strand, within BWI76_RS26840at 5566.080 kb on + strand, within BWI76_RS26840at 5566.085 kb on + strand, within BWI76_RS26840at 5566.085 kb on + strand, within BWI76_RS26840at 5566.160 kb on - strand, within BWI76_RS26840at 5566.198 kb on - strand, within BWI76_RS26840at 5566.208 kb on + strand, within BWI76_RS26840at 5566.321 kb on + strand, within BWI76_RS26840at 5566.321 kb on + strand, within BWI76_RS26840at 5566.429 kb on + strand, within BWI76_RS26840at 5566.503 kb on + strand, within BWI76_RS26840at 5566.542 kb on - strandat 5566.542 kb on - strandat 5566.705 kb on + strandat 5566.849 kb on - strandat 5566.867 kb on - strandat 5566.936 kb on - strandat 5567.124 kb on - strandat 5567.328 kb on + strand, within BWI76_RS26845at 5567.518 kb on - strand, within BWI76_RS26845at 5567.791 kb on - strand, within BWI76_RS26845at 5567.810 kb on - strand, within BWI76_RS26845at 5567.816 kb on + strand, within BWI76_RS26845at 5567.911 kb on + strand, within BWI76_RS26845at 5567.914 kb on - strand, within BWI76_RS26845at 5567.965 kb on + strand, within BWI76_RS26845at 5568.002 kb on + strand, within BWI76_RS26845at 5568.239 kb on + strand, within BWI76_RS26845at 5568.247 kb on - strand, within BWI76_RS26845at 5568.281 kb on + strand, within BWI76_RS26845at 5568.721 kb on + strand, within BWI76_RS26845at 5568.731 kb on + strand, within BWI76_RS26845at 5568.965 kb on + strand, within BWI76_RS26845at 5569.334 kb on - strandat 5569.336 kb on + strandat 5569.392 kb on + strandat 5569.392 kb on + strandat 5569.392 kb on + strandat 5569.400 kb on - strandat 5569.400 kb on - strandat 5569.472 kb on - strandat 5569.495 kb on - strandat 5569.587 kb on + strand, within BWI76_RS26850at 5569.618 kb on + strand, within BWI76_RS26850at 5569.626 kb on - strand, within BWI76_RS26850at 5569.969 kb on + strand, within BWI76_RS26850at 5570.048 kb on - strand, within BWI76_RS26850at 5570.276 kb on + strand, within BWI76_RS26850at 5570.300 kb on - strand, within BWI76_RS26850at 5570.308 kb on + strand, within BWI76_RS26850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL with sand
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5,565,968 + BWI76_RS26840 0.76 +1.3
5,565,973 + BWI76_RS26840 0.77 -0.4
5,565,981 - BWI76_RS26840 0.77 +1.9
5,566,046 - BWI76_RS26840 0.78 -0.5
5,566,080 + BWI76_RS26840 0.79 +0.2
5,566,085 + BWI76_RS26840 0.79 -0.4
5,566,085 + BWI76_RS26840 0.79 -1.0
5,566,160 - BWI76_RS26840 0.81 -2.1
5,566,198 - BWI76_RS26840 0.82 -0.4
5,566,208 + BWI76_RS26840 0.82 -0.5
5,566,321 + BWI76_RS26840 0.85 -0.2
5,566,321 + BWI76_RS26840 0.85 -0.5
5,566,429 + BWI76_RS26840 0.88 -0.1
5,566,503 + BWI76_RS26840 0.90 -1.1
5,566,542 - -0.7
5,566,542 - +0.0
5,566,705 + -0.6
5,566,849 - -0.4
5,566,867 - -1.1
5,566,936 - -0.3
5,567,124 - -0.9
5,567,328 + BWI76_RS26845 0.17 -1.1
5,567,518 - BWI76_RS26845 0.25 -0.5
5,567,791 - BWI76_RS26845 0.36 -0.7
5,567,810 - BWI76_RS26845 0.37 -2.4
5,567,816 + BWI76_RS26845 0.37 -1.0
5,567,911 + BWI76_RS26845 0.41 -1.0
5,567,914 - BWI76_RS26845 0.41 -0.7
5,567,965 + BWI76_RS26845 0.44 -0.8
5,568,002 + BWI76_RS26845 0.45 -0.1
5,568,239 + BWI76_RS26845 0.55 -0.7
5,568,247 - BWI76_RS26845 0.55 -0.8
5,568,281 + BWI76_RS26845 0.57 -0.3
5,568,721 + BWI76_RS26845 0.75 -1.6
5,568,731 + BWI76_RS26845 0.75 -0.4
5,568,965 + BWI76_RS26845 0.85 -0.8
5,569,334 - +0.1
5,569,336 + +0.8
5,569,392 + +2.2
5,569,392 + -0.7
5,569,392 + +0.8
5,569,400 - -1.1
5,569,400 - -0.5
5,569,472 - -0.9
5,569,495 - +0.6
5,569,587 + BWI76_RS26850 0.13 -0.5
5,569,618 + BWI76_RS26850 0.14 -2.0
5,569,626 - BWI76_RS26850 0.15 -1.0
5,569,969 + BWI76_RS26850 0.31 -0.4
5,570,048 - BWI76_RS26850 0.35 -1.1
5,570,276 + BWI76_RS26850 0.45 -1.5
5,570,300 - BWI76_RS26850 0.47 -0.1
5,570,308 + BWI76_RS26850 0.47 -1.5

Or see this region's nucleotide sequence