Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23520

Experiment: LB in EcoFAB_3.5mL with sand

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23510 and BWI76_RS23515 are separated by 39 nucleotidesBWI76_RS23515 and BWI76_RS23520 are separated by 382 nucleotidesBWI76_RS23520 and BWI76_RS23525 are separated by 394 nucleotides BWI76_RS23510: BWI76_RS23510 - transcriptional regulator, at 4,905,473 to 4,906,195 _RS23510 BWI76_RS23515: BWI76_RS23515 - antibiotic biosynthesis monooxygenase, at 4,906,235 to 4,906,552 _RS23515 BWI76_RS23520: BWI76_RS23520 - hypothetical protein, at 4,906,935 to 4,907,144 _RS23520 BWI76_RS23525: BWI76_RS23525 - EamA family transporter, at 4,907,539 to 4,908,429 _RS23525 Position (kb) 4906 4907 4908Strain fitness (log2 ratio) -1 0 1at 4906.055 kb on - strand, within BWI76_RS23510at 4906.413 kb on + strand, within BWI76_RS23515at 4906.488 kb on - strand, within BWI76_RS23515at 4906.523 kb on + strandat 4906.538 kb on - strandat 4906.612 kb on - strandat 4906.802 kb on + strandat 4907.013 kb on - strand, within BWI76_RS23520at 4907.133 kb on - strandat 4907.173 kb on - strandat 4907.173 kb on - strandat 4907.380 kb on - strandat 4907.380 kb on - strandat 4907.394 kb on - strandat 4907.407 kb on + strandat 4907.422 kb on - strandat 4907.439 kb on - strandat 4907.526 kb on + strandat 4907.534 kb on - strandat 4907.597 kb on + strandat 4907.753 kb on + strand, within BWI76_RS23525at 4907.792 kb on - strand, within BWI76_RS23525at 4907.792 kb on - strand, within BWI76_RS23525at 4907.796 kb on - strand, within BWI76_RS23525at 4907.819 kb on - strand, within BWI76_RS23525at 4907.999 kb on - strand, within BWI76_RS23525at 4908.128 kb on + strand, within BWI76_RS23525

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_3.5mL with sand
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4,906,055 - BWI76_RS23510 0.80 +1.5
4,906,413 + BWI76_RS23515 0.56 +0.2
4,906,488 - BWI76_RS23515 0.80 -0.1
4,906,523 + -0.6
4,906,538 - +1.3
4,906,612 - +0.8
4,906,802 + +0.5
4,907,013 - BWI76_RS23520 0.37 -1.3
4,907,133 - -0.4
4,907,173 - -0.3
4,907,173 - -0.3
4,907,380 - -0.2
4,907,380 - -0.2
4,907,394 - -1.2
4,907,407 + +0.6
4,907,422 - +0.5
4,907,439 - -0.5
4,907,526 + +1.2
4,907,534 - +0.9
4,907,597 + -0.5
4,907,753 + BWI76_RS23525 0.24 +0.8
4,907,792 - BWI76_RS23525 0.28 -0.5
4,907,792 - BWI76_RS23525 0.28 -1.0
4,907,796 - BWI76_RS23525 0.29 +0.1
4,907,819 - BWI76_RS23525 0.31 +0.1
4,907,999 - BWI76_RS23525 0.52 -0.3
4,908,128 + BWI76_RS23525 0.66 -0.4

Or see this region's nucleotide sequence